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The map label for this gene is hypD [C]

Identifier: 220915621

GI number: 220915621

Start: 576651

End: 577787

Strand: Reverse

Name: hypD [C]

Synonym: A2cp1_0502

Alternate gene names: 220915621

Gene position: 577787-576651 (Counterclockwise)

Preceding gene: 220915622

Following gene: 220915620

Centisome position: 11.49

GC content: 73.18

Gene sequence:

>1137_bases
ATGTCGAACGAGGATCTCTTCCGGCAGCTCAAGTTCCGCGATCCGGCCCGCGCCCGCGCGCTCGCCGAGGCGCTCCGCCA
CAACATGGACGCCATCGGCCGCGAGGTGTCGGTGATGCACGTGTGCGGCAGCCACGAGCAGGCCATCGCCCGCTTCGGCC
TGCGCGCGGTGCTCCCGCCCGGCCTGGAGCTCATCATGGGCCCGGGCTGCCCGGTCTGCGTCACCGACGGCCCCGAGGTG
GACGAGGCGGTCGCGCTGGCGATGCAGGGCGTGCGCGTGTGCACGTACGGTGACATGCTCCGGCTCCCCGGCACCGCGCG
CTCGCTCGCCGACGCGCAGGCCGACGGCGGCAAGGTCGAGGTGGTGTACTCGATCTCGCAGGCGGTCGAGCTCGCCCATG
CGCACCCCGACGAGCAGGTGGTGTTCCTGGCGAGCGGCTTCGAGACCACCGCGGTGGCCACCGCGGCGGTGGCGCTCGCG
TCCCCGCCCCCGAACTTCTCCATCCTCTCGGTCCACAAGTACGTCCCGGCGGCGATGGAGATCGTGGCCGCCTCGAAGGA
GACGCACATCGAGGGCTACATCGCGGCCGGGCACGCCGCGATCATCACCGGCTGGGCCATCTTCGAGCCGTTCGCGGCCC
GCACCGGCGCGCCGGTGGTGGTGGCCGGGTTCGAGCCGCTCGACATCCTGGCGGCGCTGGTGAAGCTCACCGAGCTCATC
CGCGAGGGTCGGCCCGAGGTGGCGAACGTCTACCCGCGCTGCGTGACGAAGGAGGGCAACCTCCCGGCGCAGCGCTCGCT
GTGGCGGGCGTTCCGGACCGTGACCGGCCGCTGGCGCGGCATCGCCGAGGTCCCGGGCGGCAACCTCGAGCTGGTGCCGG
AGCTCGCCTCGCTCGACGCCCGCAAGCGCTTCCGCATCGACACGGCGGGCGTGCGCGACGCGGCGGCGGAGGAGGAGGCG
AAGGGGTGCCTCTGCGGCCGGATCATGCTCGGCCTCGCCACCCCGGAGCACTGCGCGCTGTTCGGCACCACCTGCGTCCC
CGAGTCGCCGGTGGGGGCGTGCATGGTGTCGTCGGAGGGGCAGTGCCGGATCTGGCACACGTACGGCGGCGTGCCCGATC
TGCGCAAGGTCGGCTAG

Upstream 100 bases:

>100_bases
CCAGATCCTGGAGGTCTCCGGCGCGAAGGAGGACCTCATGGCCGCCGACGTCCGGGGCGAGATGGCCGCCGGGAAGGACC
AGAAGTAGGGAGGCCCCGCG

Downstream 100 bases:

>100_bases
GAAGGCGCGGAGACCCATGGACACGAAGGTGCAGCAGAAGATCGGCCTGAAGCACGGCTCCGGCGGGCGCGCCATGCGCC
AGCTCATCGAGGACGTGTTC

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSNEDLFRQLKFRDPARARALAEALRHNMDAIGREVSVMHVCGSHEQAIARFGLRAVLPPGLELIMGPGCPVCVTDGPEV
DEAVALAMQGVRVCTYGDMLRLPGTARSLADAQADGGKVEVVYSISQAVELAHAHPDEQVVFLASGFETTAVATAAVALA
SPPPNFSILSVHKYVPAAMEIVAASKETHIEGYIAAGHAAIITGWAIFEPFAARTGAPVVVAGFEPLDILAALVKLTELI
REGRPEVANVYPRCVTKEGNLPAQRSLWRAFRTVTGRWRGIAEVPGGNLELVPELASLDARKRFRIDTAGVRDAAAEEEA
KGCLCGRIMLGLATPEHCALFGTTCVPESPVGACMVSSEGQCRIWHTYGGVPDLRKVG

Sequences:

>Translated_378_residues
MSNEDLFRQLKFRDPARARALAEALRHNMDAIGREVSVMHVCGSHEQAIARFGLRAVLPPGLELIMGPGCPVCVTDGPEV
DEAVALAMQGVRVCTYGDMLRLPGTARSLADAQADGGKVEVVYSISQAVELAHAHPDEQVVFLASGFETTAVATAAVALA
SPPPNFSILSVHKYVPAAMEIVAASKETHIEGYIAAGHAAIITGWAIFEPFAARTGAPVVVAGFEPLDILAALVKLTELI
REGRPEVANVYPRCVTKEGNLPAQRSLWRAFRTVTGRWRGIAEVPGGNLELVPELASLDARKRFRIDTAGVRDAAAEEEA
KGCLCGRIMLGLATPEHCALFGTTCVPESPVGACMVSSEGQCRIWHTYGGVPDLRKVG
>Mature_377_residues
SNEDLFRQLKFRDPARARALAEALRHNMDAIGREVSVMHVCGSHEQAIARFGLRAVLPPGLELIMGPGCPVCVTDGPEVD
EAVALAMQGVRVCTYGDMLRLPGTARSLADAQADGGKVEVVYSISQAVELAHAHPDEQVVFLASGFETTAVATAAVALAS
PPPNFSILSVHKYVPAAMEIVAASKETHIEGYIAAGHAAIITGWAIFEPFAARTGAPVVVAGFEPLDILAALVKLTELIR
EGRPEVANVYPRCVTKEGNLPAQRSLWRAFRTVTGRWRGIAEVPGGNLELVPELASLDARKRFRIDTAGVRDAAAEEEAK
GCLCGRIMLGLATPEHCALFGTTCVPESPVGACMVSSEGQCRIWHTYGGVPDLRKVG

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=368, Percent_Identity=36.4130434782609, Blast_Score=222, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40237; Mature: 40106

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEDLFRQLKFRDPARARALAEALRHNMDAIGREVSVMHVCGSHEQAIARFGLRAVLPP
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCHHCCCC
GLELIMGPGCPVCVTDGPEVDEAVALAMQGVRVCTYGDMLRLPGTARSLADAQADGGKVE
CCEEEECCCCCEEECCCCCHHHHHHHHHCCCEEEECCCEEECCCCHHHHHHHCCCCCEEE
VVYSISQAVELAHAHPDEQVVFLASGFETTAVATAAVALASPPPNFSILSVHKYVPAAME
EEEEHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH
IVAASKETHIEGYIAAGHAAIITGWAIFEPFAARTGAPVVVAGFEPLDILAALVKLTELI
HHHCCCCCCCEEEEEECCHHEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
REGRPEVANVYPRCVTKEGNLPAQRSLWRAFRTVTGRWRGIAEVPGGNLELVPELASLDA
HCCCCCHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCHHHCCCC
RKRFRIDTAGVRDAAAEEEAKGCLCGRIMLGLATPEHCALFGTTCVPESPVGACMVSSEG
HHHEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHEEEECCCCCCCCCCEEEECCCC
QCRIWHTYGGVPDLRKVG
CEEEEEECCCCCCHHHCC
>Mature Secondary Structure 
SNEDLFRQLKFRDPARARALAEALRHNMDAIGREVSVMHVCGSHEQAIARFGLRAVLPP
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCHHCCCC
GLELIMGPGCPVCVTDGPEVDEAVALAMQGVRVCTYGDMLRLPGTARSLADAQADGGKVE
CCEEEECCCCCEEECCCCCHHHHHHHHHCCCEEEECCCEEECCCCHHHHHHHCCCCCEEE
VVYSISQAVELAHAHPDEQVVFLASGFETTAVATAAVALASPPPNFSILSVHKYVPAAME
EEEEHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH
IVAASKETHIEGYIAAGHAAIITGWAIFEPFAARTGAPVVVAGFEPLDILAALVKLTELI
HHHCCCCCCCEEEEEECCHHEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
REGRPEVANVYPRCVTKEGNLPAQRSLWRAFRTVTGRWRGIAEVPGGNLELVPELASLDA
HCCCCCHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCHHHCCCC
RKRFRIDTAGVRDAAAEEEAKGCLCGRIMLGLATPEHCALFGTTCVPESPVGACMVSSEG
HHHEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHEEEECCCCCCCCCCEEEECCCC
QCRIWHTYGGVPDLRKVG
CEEEEEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]