Click here to switch to the map view.

The map label for this gene is hypB [H]

Identifier: 220915618

GI number: 220915618

Start: 574396

End: 575250

Strand: Reverse

Name: hypB [H]

Synonym: A2cp1_0499

Alternate gene names: 220915618

Gene position: 575250-574396 (Counterclockwise)

Preceding gene: 220915619

Following gene: 220915615

Centisome position: 11.44

GC content: 70.64

Gene sequence:

>855_bases
ATGTGCACGACCTGCGGCTGCGGTGACCCCGAGCTCGTCCCGGTGGAGCTGCACGAGAAGATCCTGGCCGGCAACGATCG
CGCCGCCCGCCACAACCGGGAGCACTTCCTCGAGGCCGGCGTCCTGGCGCTCAACATCATGGGCTCGCCCGGCGCCGGAA
AGACCGGCGTGCTCGAGGCGACCGCGAAGGCCGCGGCGTCGAAGGGCTGGAAGCTCGGCGCGGTGTCCGCCGACCTCGCC
ACCGACAACGACGCGCGCCGGCTCGAGAAGGCGGGCATCCCGTCGAAGGCGATCACCACCGGCCAGGCGTGCCACCTCGA
CGCCGAGCTCGTGCACCGCAGCCTGCACGACTTCCCCTGGCGCGACACCGACGTCTTCTTCATCGAGAACGTCGGCAACC
TGGTGTGCCCGGCCATCTACGACCTGGGCCAGGCGGCGAACGTGGTGGTGCTCTCGGTCACCGAGGGCGAGGACAAGCCG
CTCAAGTACCCGGTGATGTTCAAGGCGGCGGACCTGGTGCTGGTCAGCAAGGTGGACCTCGTCCCCCACCTCGACGTGGA
TCTCCCGAAGCTCCGCGACGCCATCGCGCACGTCATGCCGACCGCGAAGGTGATCGAGCTGTCCGCTCGCACGGGCGAGG
GCATGGACCGCTGGATCGCGTGGCTGGAGGAGCTGCGGCGGCCCATCCTGAGGCCAGCGCACGCGCGGTCGCACACGCAC
GAGCACGGGCACGGGCACGATCACACGCACGCGGACGACCACGCCGCCGAGCACACCCACGCCGCCGAGCACACCCACGA
TCACGGCCACGGCCACGATCACGGCCACGGCCACGATCACGGGCACCGGCACTAG

Upstream 100 bases:

>100_bases
GCGGCGCGGTCCTGCGCTGCCCGACCTGCGACGTCCCGGCCCGGCTCGACGAGGGCTCGGACGCGCTCACCCTCGACAGC
ATCGACATGGAGGTGCCCTG

Downstream 100 bases:

>100_bases
CGGCCGGCGACGGCCGGCGGCCTACCCCACCGACGCGGTCGAGGACGACCGCTCCTGGATCATCGCCGCGAGCCGGCCGA
ACGCCTTCTCCAGCGTCTCC

Product: hydrogenase accessory protein HypB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MCTTCGCGDPELVPVELHEKILAGNDRAARHNREHFLEAGVLALNIMGSPGAGKTGVLEATAKAAASKGWKLGAVSADLA
TDNDARRLEKAGIPSKAITTGQACHLDAELVHRSLHDFPWRDTDVFFIENVGNLVCPAIYDLGQAANVVVLSVTEGEDKP
LKYPVMFKAADLVLVSKVDLVPHLDVDLPKLRDAIAHVMPTAKVIELSARTGEGMDRWIAWLEELRRPILRPAHARSHTH
EHGHGHDHTHADDHAAEHTHAAEHTHDHGHGHDHGHGHDHGHRH

Sequences:

>Translated_284_residues
MCTTCGCGDPELVPVELHEKILAGNDRAARHNREHFLEAGVLALNIMGSPGAGKTGVLEATAKAAASKGWKLGAVSADLA
TDNDARRLEKAGIPSKAITTGQACHLDAELVHRSLHDFPWRDTDVFFIENVGNLVCPAIYDLGQAANVVVLSVTEGEDKP
LKYPVMFKAADLVLVSKVDLVPHLDVDLPKLRDAIAHVMPTAKVIELSARTGEGMDRWIAWLEELRRPILRPAHARSHTH
EHGHGHDHTHADDHAAEHTHAAEHTHDHGHGHDHGHGHDHGHRH
>Mature_284_residues
MCTTCGCGDPELVPVELHEKILAGNDRAARHNREHFLEAGVLALNIMGSPGAGKTGVLEATAKAAASKGWKLGAVSADLA
TDNDARRLEKAGIPSKAITTGQACHLDAELVHRSLHDFPWRDTDVFFIENVGNLVCPAIYDLGQAANVVVLSVTEGEDKP
LKYPVMFKAADLVLVSKVDLVPHLDVDLPKLRDAIAHVMPTAKVIELSARTGEGMDRWIAWLEELRRPILRPAHARSHTH
EHGHGHDHTHADDHAAEHTHAAEHTHDHGHGHDHGHGHDHGHRH

Specific function: Could be involved in nickel binding and accumulation [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=212, Percent_Identity=45.2830188679245, Blast_Score=190, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003495
- InterPro:   IPR004392
- InterPro:   IPR012202 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 30906; Mature: 30906

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTTCGCGDPELVPVELHEKILAGNDRAARHNREHFLEAGVLALNIMGSPGAGKTGVLEA
CCCCCCCCCCCEEHHHHHHHHHCCCCHHHHCCHHHHHHHCEEEEEEECCCCCCCCCHHHH
TAKAAASKGWKLGAVSADLATDNDARRLEKAGIPSKAITTGQACHLDAELVHRSLHDFPW
HHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCHHHCCCCCHHCCCHHHHHHHHHCCCC
RDTDVFFIENVGNLVCPAIYDLGQAANVVVLSVTEGEDKPLKYPVMFKAADLVLVSKVDL
CCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEHHCEEEEEHCCC
VPHLDVDLPKLRDAIAHVMPTAKVIELSARTGEGMDRWIAWLEELRRPILRPAHARSHTH
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC
EHGHGHDHTHADDHAAEHTHAAEHTHDHGHGHDHGHGHDHGHRH
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MCTTCGCGDPELVPVELHEKILAGNDRAARHNREHFLEAGVLALNIMGSPGAGKTGVLEA
CCCCCCCCCCCEEHHHHHHHHHCCCCHHHHCCHHHHHHHCEEEEEEECCCCCCCCCHHHH
TAKAAASKGWKLGAVSADLATDNDARRLEKAGIPSKAITTGQACHLDAELVHRSLHDFPW
HHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCHHHCCCCCHHCCCHHHHHHHHHCCCC
RDTDVFFIENVGNLVCPAIYDLGQAANVVVLSVTEGEDKPLKYPVMFKAADLVLVSKVDL
CCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEHHCEEEEEHCCC
VPHLDVDLPKLRDAIAHVMPTAKVIELSARTGEGMDRWIAWLEELRRPILRPAHARSHTH
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC
EHGHGHDHTHADDHAAEHTHAAEHTHDHGHGHDHGHGHDHGHRH
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486288 [H]