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The map label for this gene is ybhS [H]

Identifier: 220914946

GI number: 220914946

Start: 324621

End: 325760

Strand: Reverse

Name: ybhS [H]

Synonym: Mnod_8102

Alternate gene names: 220914946

Gene position: 325760-324621 (Counterclockwise)

Preceding gene: 220914947

Following gene: 220914945

Centisome position: 71.12

GC content: 67.89

Gene sequence:

>1140_bases
ATGACGCGACCGGACGGGAATCGCCTCAGCGCGCGCCGCATCGCGGCGCTCATCCGCAAGGAGTCGCTGCAGGTCCTGCG
CGATCCCTCCAGCCTCGTCGTCGCCTTCGTCCTCCCGGCGCTCCTGCTGTTCCTGTTCGGCTTCGGAATCTCCTTCGATG
CCAACCGGATCAAGATTGGCCTCGTCGCGGAAGAGTCGACACCCGAGACCTCCTGGTTCGAGGTCGCACTCTCCAATACG
CCGTACTTCGACGTTCGGTTCGCGAGCGACCGGCGCGCGTTCACCGATGACCTCTCCGCGGGGCGCCTCAACGGGATCGT
CGTGCTCGCTGGCGACTTCAGTGAGCGGCTCGCGCGCGGCGACACGGCGGGCCTCCAAGTCATCACGGACGGCAGCGACC
CGAACACCGCCGGCCTCGTCGCCGGCTATGTGCAGGGCGCCTGGAGCGTCTGGACGGCCCAGCGCGGGCTCGGCCGCGGC
GGGGCTGCGCCGGCACAGGTGAATGTCGAGTCGCGCTTCTGGTTCAATCCCGAGCTCGAGAGCCGCCGCTTCCTCGTGCC
GGGATCCATCTCACTGATCCAGATGATGATCGGCGCTCTCCTCACCGCCCTCGTAGTCTCGCGCGAGTGGGAGCGCGGGA
CGATGGAGGCGCTGCTCGCCACCCCGGTGAGTATCCTCGAGTTCATCATCGGGAAGCTCGTGCCCAACTTCGTCCTCGGC
CTGTGCGCCATGGCCGTCTGCGTGCTCGCTGCGCTCTTCGTGTTCGACATCCCGTTGCGCGGGTCGCTCGCCACACTGGT
CGGCTTCACGGCCGTGTTCCTCCTTGTGGCCCTGGGCCTCGGCCTGCTGATCTCGACGGTTGCGCGCACGCAGTTCCTCG
CCAGCCAGGTCGCCATGCTGCTCGCGTTCCTGCCAGGCCTGTATCTCTCAGGCTTCCTGTTCGAAGTCGCCAGCATGCCG
CGCCTGCTGCGCGCGGTCGCGGTTCTGATCCCGGCGGGCTACTACGTGCGTGGGCTCAACACGATCTTCCTCGCCGGCGA
CATCGCCGCCGTCCTCGTGCCGGCCACCATCGTTCTCCTCGCGATGAGCGCGGTCCTGTTCGCGCTCACGGCGGCCAAGT
CGCGCCAGACCCTGGACTAG

Upstream 100 bases:

>100_bases
AGGCCTCGGTGCGCTCGCACGACCTCCCCAACCCCACGCTCGAGGACGCCTTCATCGCCTTGATCGAGGCGCAGGAGCGC
GAGAGCGCGAGGTCAGCCGC

Downstream 100 bases:

>100_bases
AGACATGAGGACCCGCCTCCTTGCCCTGATCGTGAAGGAGCTGCTGGCCACGTTCCGCGATCGAAAGGCACGGGCCGCGC
TGACCGTGCCGCCGTTCATC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTRPDGNRLSARRIAALIRKESLQVLRDPSSLVVAFVLPALLLFLFGFGISFDANRIKIGLVAEESTPETSWFEVALSNT
PYFDVRFASDRRAFTDDLSAGRLNGIVVLAGDFSERLARGDTAGLQVITDGSDPNTAGLVAGYVQGAWSVWTAQRGLGRG
GAAPAQVNVESRFWFNPELESRRFLVPGSISLIQMMIGALLTALVVSREWERGTMEALLATPVSILEFIIGKLVPNFVLG
LCAMAVCVLAALFVFDIPLRGSLATLVGFTAVFLLVALGLGLLISTVARTQFLASQVAMLLAFLPGLYLSGFLFEVASMP
RLLRAVAVLIPAGYYVRGLNTIFLAGDIAAVLVPATIVLLAMSAVLFALTAAKSRQTLD

Sequences:

>Translated_379_residues
MTRPDGNRLSARRIAALIRKESLQVLRDPSSLVVAFVLPALLLFLFGFGISFDANRIKIGLVAEESTPETSWFEVALSNT
PYFDVRFASDRRAFTDDLSAGRLNGIVVLAGDFSERLARGDTAGLQVITDGSDPNTAGLVAGYVQGAWSVWTAQRGLGRG
GAAPAQVNVESRFWFNPELESRRFLVPGSISLIQMMIGALLTALVVSREWERGTMEALLATPVSILEFIIGKLVPNFVLG
LCAMAVCVLAALFVFDIPLRGSLATLVGFTAVFLLVALGLGLLISTVARTQFLASQVAMLLAFLPGLYLSGFLFEVASMP
RLLRAVAVLIPAGYYVRGLNTIFLAGDIAAVLVPATIVLLAMSAVLFALTAAKSRQTLD
>Mature_378_residues
TRPDGNRLSARRIAALIRKESLQVLRDPSSLVVAFVLPALLLFLFGFGISFDANRIKIGLVAEESTPETSWFEVALSNTP
YFDVRFASDRRAFTDDLSAGRLNGIVVLAGDFSERLARGDTAGLQVITDGSDPNTAGLVAGYVQGAWSVWTAQRGLGRGG
AAPAQVNVESRFWFNPELESRRFLVPGSISLIQMMIGALLTALVVSREWERGTMEALLATPVSILEFIIGKLVPNFVLGL
CAMAVCVLAALFVFDIPLRGSLATLVGFTAVFLLVALGLGLLISTVARTQFLASQVAMLLAFLPGLYLSGFLFEVASMPR
LLRAVAVLIPAGYYVRGLNTIFLAGDIAAVLVPATIVLLAMSAVLFALTAAKSRQTLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=372, Percent_Identity=45.1612903225806, Blast_Score=348, Evalue=3e-97,
Organism=Escherichia coli, GI48994943, Length=336, Percent_Identity=30.3571428571429, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787010, Length=338, Percent_Identity=29.8816568047337, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI226510979, Length=291, Percent_Identity=25.7731958762887, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650855, Length=370, Percent_Identity=24.0540540540541, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650853, Length=370, Percent_Identity=24.0540540540541, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40572; Mature: 40441

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPDGNRLSARRIAALIRKESLQVLRDPSSLVVAFVLPALLLFLFGFGISFDANRIKIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LVAEESTPETSWFEVALSNTPYFDVRFASDRRAFTDDLSAGRLNGIVVLAGDFSERLARG
EEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHCCCCCCCCCCEEEEECCHHHHHHCC
DTAGLQVITDGSDPNTAGLVAGYVQGAWSVWTAQRGLGRGGAAPAQVNVESRFWFNPELE
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCCC
SRRFLVPGSISLIQMMIGALLTALVVSREWERGTMEALLATPVSILEFIIGKLVPNFVLG
CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
LCAMAVCVLAALFVFDIPLRGSLATLVGFTAVFLLVALGLGLLISTVARTQFLASQVAML
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFLPGLYLSGFLFEVASMPRLLRAVAVLIPAGYYVRGLNTIFLAGDIAAVLVPATIVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHHHHHHHHHHHHHHH
AMSAVLFALTAAKSRQTLD
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRPDGNRLSARRIAALIRKESLQVLRDPSSLVVAFVLPALLLFLFGFGISFDANRIKIG
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LVAEESTPETSWFEVALSNTPYFDVRFASDRRAFTDDLSAGRLNGIVVLAGDFSERLARG
EEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHCCCCCCCCCCEEEEECCHHHHHHCC
DTAGLQVITDGSDPNTAGLVAGYVQGAWSVWTAQRGLGRGGAAPAQVNVESRFWFNPELE
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCCC
SRRFLVPGSISLIQMMIGALLTALVVSREWERGTMEALLATPVSILEFIIGKLVPNFVLG
CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
LCAMAVCVLAALFVFDIPLRGSLATLVGFTAVFLLVALGLGLLISTVARTQFLASQVAML
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFLPGLYLSGFLFEVASMPRLLRAVAVLIPAGYYVRGLNTIFLAGDIAAVLVPATIVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHHHHHHHHHHHHHHH
AMSAVLFALTAAKSRQTLD
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]