Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 220905371

GI number: 220905371

Start: 2539808

End: 2541286

Strand: Reverse

Name: ydiF [H]

Synonym: Ddes_2109

Alternate gene names: 220905371

Gene position: 2541286-2539808 (Counterclockwise)

Preceding gene: 220905372

Following gene: 220905370

Centisome position: 88.44

GC content: 53.68

Gene sequence:

>1479_bases
ATGGCTTTGATCAGTATTTTCGGTCTTGATTTTGCCCACCCCGGAGGATTGCAGGTTTTTGACAGCGTATCACTACAGCT
TGATACGGGCTGGAAGCTTGGCCTGATCGGCAGAAACGGACGCGGTAAAACCACGTTTTTGAAGCTACTGTGTGGTGAAT
ACCCGCATCGCGGCTCTATTCATACGCCGGTGGAGATGGATTATTTTCCCTTTGCCGTGAAAAATACGGAGCAGAGTGGT
CTGGATGTGGCCCGAAACATCTGTGCAGGCCTGGAGGAGTGGCGGCTGGAGCGAGAGGCCTCGTTGCTGGAGCTTTCTCT
TGAAGCACTTACACGGCCGTTTCGGACGCTAAGCGGTGGTGAAGCCACCAAGCTTCTGCTGGCGTCGCTGTTTTTGCGAG
GAAATAATTTTCTGCTTATTGACGAGCCCACCAGTCATCTGGATATCAAGGCGCGCCGGATAGTTGGAACGTACTTGCAG
GCCAAGAAAGGCTTTATCCTGGTTTCGCACGACCGGGTTCTTCTGGACGGCTGCATTGACCATGTATTGTCCATTAACCG
TGCAGGAATAGAGCTACAGCGCGGCAACTTCAGTTCGTGGCAGACTGATCGCGAACGGCGGGATCAACAGGAACTGGCGA
ACAACAGCAGGCTCAAAAAAGAGATAGCACGGCTGGAGGAAAGTGCCAGGCGCAGTGCCGACTGGTCGCGAGCGGCCGAA
AAAGGCAAATTCGGCAATGGGCCGGTGGACCGTGGGTTTATTGGACACAAAGCGGCCAAGATGATGCAGCGGGCCAAAAC
CGTGGAATCCCGGCGCAGTAAGGCTGCGGATGAAAAAAAACAGCTTTTGCGTAACCTGGAGAATGATGCTCCGCTGTCCA
TGCGGCCCCAGACGTTTCACAGCAGGCGCCTTGCAGAGTGCCGGAGCCTGTCTTTCAGTTATGGCGATGTACCTGTGCTG
CGGAAGATTTCGTTTAGCATCATGAGCGGAGAGCGTTTGGCGCTGTCCGGTAGGAACGGCAGTGGAAAATCCACGTTGCT
GAAGCTTTTGGCCCGGAAATTGACGGAATTTCAGGGAACCATGTATCTTCCCGGCGGTTTGCGCATCTCCTACGTCCCGC
AGGATGCCTCCTTTCTGGCCGGGAGCCTGAAAGACTTCACCCGTAAACGGGGTATTGATGAAAGCCTGTTCCGGGCGGTG
CTGCACCGCTTCGGTTTTGAACGAAGCCAGTTTAGTACAGATATGAGCGGGTTCAGCGCCGGTCAGAAAAAGAAAGCGCT
TCTTGCAGCAAGTCTTTGCGAAGAGGCACATTTGTATCTTTGGGATGAGCCGCTGAACTATATCGATGTGATTTCACGGG
TGCAGATAGAAAACCTGATCCTGGAATATCAGCCGAGCATGGTACTGGTTGAACATGATCAGATGTTTCTGGAGCGTGTA
GCCACGGAGACGCTGCACCTCTCGCCTGTTGACGGATAG

Upstream 100 bases:

>100_bases
GTAGACGTGCATTTGGAGACTGCGGAAAGGAAATTTCCAGCAGTCTTTTTTTATGCGCACTTCGTGAATACGGAGGCCAG
ACGCCCAGGAGGTTTCCTGT

Downstream 100 bases:

>100_bases
TGCACTCCCGTGCCGCGCTGCCGTAGCGACTTGCCCAGCGCCGCAGCCAGATTCCGTTTTGGCGGGCTGGCAGCATGGGC
CTGCATCTCGTATGCCGGTT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MALISIFGLDFAHPGGLQVFDSVSLQLDTGWKLGLIGRNGRGKTTFLKLLCGEYPHRGSIHTPVEMDYFPFAVKNTEQSG
LDVARNICAGLEEWRLEREASLLELSLEALTRPFRTLSGGEATKLLLASLFLRGNNFLLIDEPTSHLDIKARRIVGTYLQ
AKKGFILVSHDRVLLDGCIDHVLSINRAGIELQRGNFSSWQTDRERRDQQELANNSRLKKEIARLEESARRSADWSRAAE
KGKFGNGPVDRGFIGHKAAKMMQRAKTVESRRSKAADEKKQLLRNLENDAPLSMRPQTFHSRRLAECRSLSFSYGDVPVL
RKISFSIMSGERLALSGRNGSGKSTLLKLLARKLTEFQGTMYLPGGLRISYVPQDASFLAGSLKDFTRKRGIDESLFRAV
LHRFGFERSQFSTDMSGFSAGQKKKALLAASLCEEAHLYLWDEPLNYIDVISRVQIENLILEYQPSMVLVEHDQMFLERV
ATETLHLSPVDG

Sequences:

>Translated_492_residues
MALISIFGLDFAHPGGLQVFDSVSLQLDTGWKLGLIGRNGRGKTTFLKLLCGEYPHRGSIHTPVEMDYFPFAVKNTEQSG
LDVARNICAGLEEWRLEREASLLELSLEALTRPFRTLSGGEATKLLLASLFLRGNNFLLIDEPTSHLDIKARRIVGTYLQ
AKKGFILVSHDRVLLDGCIDHVLSINRAGIELQRGNFSSWQTDRERRDQQELANNSRLKKEIARLEESARRSADWSRAAE
KGKFGNGPVDRGFIGHKAAKMMQRAKTVESRRSKAADEKKQLLRNLENDAPLSMRPQTFHSRRLAECRSLSFSYGDVPVL
RKISFSIMSGERLALSGRNGSGKSTLLKLLARKLTEFQGTMYLPGGLRISYVPQDASFLAGSLKDFTRKRGIDESLFRAV
LHRFGFERSQFSTDMSGFSAGQKKKALLAASLCEEAHLYLWDEPLNYIDVISRVQIENLILEYQPSMVLVEHDQMFLERV
ATETLHLSPVDG
>Mature_491_residues
ALISIFGLDFAHPGGLQVFDSVSLQLDTGWKLGLIGRNGRGKTTFLKLLCGEYPHRGSIHTPVEMDYFPFAVKNTEQSGL
DVARNICAGLEEWRLEREASLLELSLEALTRPFRTLSGGEATKLLLASLFLRGNNFLLIDEPTSHLDIKARRIVGTYLQA
KKGFILVSHDRVLLDGCIDHVLSINRAGIELQRGNFSSWQTDRERRDQQELANNSRLKKEIARLEESARRSADWSRAAEK
GKFGNGPVDRGFIGHKAAKMMQRAKTVESRRSKAADEKKQLLRNLENDAPLSMRPQTFHSRRLAECRSLSFSYGDVPVLR
KISFSIMSGERLALSGRNGSGKSTLLKLLARKLTEFQGTMYLPGGLRISYVPQDASFLAGSLKDFTRKRGIDESLFRAVL
HRFGFERSQFSTDMSGFSAGQKKKALLAASLCEEAHLYLWDEPLNYIDVISRVQIENLILEYQPSMVLVEHDQMFLERVA
TETLHLSPVDG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=510, Percent_Identity=24.9019607843137, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI27881506, Length=520, Percent_Identity=24.6153846153846, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI10947137, Length=520, Percent_Identity=24.6153846153846, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI10947135, Length=384, Percent_Identity=26.5625, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI69354671, Length=384, Percent_Identity=26.5625, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI134142335, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI134142337, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI90421313, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1789751, Length=528, Percent_Identity=28.4090909090909, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1787041, Length=526, Percent_Identity=26.425855513308, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=25.0950570342205, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787182, Length=536, Percent_Identity=23.8805970149254, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788165, Length=193, Percent_Identity=30.0518134715026, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786698, Length=192, Percent_Identity=25, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787164, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787112, Length=191, Percent_Identity=28.7958115183246, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=535, Percent_Identity=25.4205607476636, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17555318, Length=520, Percent_Identity=24.8076923076923, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17553372, Length=525, Percent_Identity=25.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320874, Length=520, Percent_Identity=24.8076923076923, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6321121, Length=402, Percent_Identity=26.3681592039801, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6323278, Length=372, Percent_Identity=25.2688172043011, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6325030, Length=186, Percent_Identity=31.1827956989247, Blast_Score=80, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6324314, Length=186, Percent_Identity=28.494623655914, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24666836, Length=536, Percent_Identity=26.6791044776119, Blast_Score=128, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24642252, Length=535, Percent_Identity=25.0467289719626, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI18859989, Length=535, Percent_Identity=25.0467289719626, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24641342, Length=524, Percent_Identity=24.4274809160305, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI45552343, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552345, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552353, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552363, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24583969, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552361, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552349, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552335, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552339, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552347, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552357, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552351, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552337, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552341, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552359, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45550972, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552355, Length=185, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 55306; Mature: 55175

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALISIFGLDFAHPGGLQVFDSVSLQLDTGWKLGLIGRNGRGKTTFLKLLCGEYPHRGSI
CCEEEEECCCCCCCCCCEEEECEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
HTPVEMDYFPFAVKNTEQSGLDVARNICAGLEEWRLEREASLLELSLEALTRPFRTLSGG
CCCCCCCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EATKLLLASLFLRGNNFLLIDEPTSHLDIKARRIVGTYLQAKKGFILVSHDRVLLDGCID
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
HVLSINRAGIELQRGNFSSWQTDRERRDQQELANNSRLKKEIARLEESARRSADWSRAAE
HHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KGKFGNGPVDRGFIGHKAAKMMQRAKTVESRRSKAADEKKQLLRNLENDAPLSMRPQTFH
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
SRRLAECRSLSFSYGDVPVLRKISFSIMSGERLALSGRNGSGKSTLLKLLARKLTEFQGT
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
MYLPGGLRISYVPQDASFLAGSLKDFTRKRGIDESLFRAVLHRFGFERSQFSTDMSGFSA
EECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCHHHCCC
GQKKKALLAASLCEEAHLYLWDEPLNYIDVISRVQIENLILEYQPSMVLVEHDQMFLERV
CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHH
ATETLHLSPVDG
HHHHEEECCCCC
>Mature Secondary Structure 
ALISIFGLDFAHPGGLQVFDSVSLQLDTGWKLGLIGRNGRGKTTFLKLLCGEYPHRGSI
CEEEEECCCCCCCCCCEEEECEEEEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
HTPVEMDYFPFAVKNTEQSGLDVARNICAGLEEWRLEREASLLELSLEALTRPFRTLSGG
CCCCCCCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EATKLLLASLFLRGNNFLLIDEPTSHLDIKARRIVGTYLQAKKGFILVSHDRVLLDGCID
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
HVLSINRAGIELQRGNFSSWQTDRERRDQQELANNSRLKKEIARLEESARRSADWSRAAE
HHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KGKFGNGPVDRGFIGHKAAKMMQRAKTVESRRSKAADEKKQLLRNLENDAPLSMRPQTFH
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
SRRLAECRSLSFSYGDVPVLRKISFSIMSGERLALSGRNGSGKSTLLKLLARKLTEFQGT
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
MYLPGGLRISYVPQDASFLAGSLKDFTRKRGIDESLFRAVLHRFGFERSQFSTDMSGFSA
EECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCHHHCCC
GQKKKALLAASLCEEAHLYLWDEPLNYIDVISRVQIENLILEYQPSMVLVEHDQMFLERV
CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHH
ATETLHLSPVDG
HHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]