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The map label for this gene is glcF [H]

Identifier: 220905255

GI number: 220905255

Start: 2399839

End: 2401134

Strand: Reverse

Name: glcF [H]

Synonym: Ddes_1993

Alternate gene names: 220905255

Gene position: 2401134-2399839 (Counterclockwise)

Preceding gene: 220905256

Following gene: 220905254

Centisome position: 83.56

GC content: 61.34

Gene sequence:

>1296_bases
ATGAGTAATCTGCACGAACTGGCCCAGCGCCTTATGGCGCTGGACGACAAAGTCACGGCCTGCATGAAATGCGGCATGTG
CCAGGCCGTGTGCCCCATGTTCGGCGCTTCCGGTATGGAGGCCGACGTGGCGCGCGGCAAGCTGGCGCTTATCGACAATC
TGGCCCATGAAATGATCCAGGACCCCGAAGCCGTGGCCGACAAGCTGGGCCGCTGCCTTCTGTGCGGCTCCTGCCAGGCG
TCCTGCCCGCCCGGCGTCCAGATTATGGACGTGTTTATGGAAGCGCGGGAAATCGTCAACGCCTATCTGGGTCTGCATCC
GGTCAAAAAAATGATCTTCCGCGCAGTGCTGCCGCAGCCCGGCGTGTTTAACCTCGCCATGCGCATGGGTGCTCCTGTTC
AGGGGCTGATCTTCCGCAGCACGGGTTCGGCTCAGGGTACGGTGTGCGCGCCCATGCTGAACTTCATGCTGGGCGACCGC
CATATGCGCCCCCTGGCCAAAAAGCCCCTGCACGCTCGCTACGGCGCGCTTGACGAACGCCGCCCGGCCGGCGGCATCAA
GGTGGCCTTTTATCCGGGCTGCATGGGCGACAAGATGTATACTGATATGGCTGAAGCCTGCCTCAAGGTGCTGCGCCATC
ACAACGTGGCGGTCTTTATGCCCAAGGGCCTGACCTGCTGCGGCATTCCTGCCCTGTCCTCCGGCGATGCCGAGGGCATG
GTCAAACAGATGAAGGTCAACCTGCGCGCCCTCGACGGTGCGGATTTTGACTACATTCTCAGCCCCTGCGGTTCCTGTAC
TTCTACTGTCAAGGAACTGTGGCCCCGCTACGCCGGGCGCCTTGGCGCCGCGGAACTGCGCAAGGCCGAGCAGCTTGCTG
CCAAGGCTATGGACATCAACGCCTTTCTTGTGGATGTGCTCAAGGTGCAACCTGCCGAAGCTCCGGCGGGCAACGCCACG
ACCGTGACCTATCACGACTCCTGCCATCTCAAAAAATCGCTGGGTGTTGTGGGCCAGCCCCGTGCTGTCATGGCGGCCAA
CCCCGCCTACAAGGTGGTGGAAATGGCCGAAGCTGACCGTTGCTGCGGCTGCGGCGGCTCGTTCAACCTCTTCCACTATG
ACTATTCGCGCAAGATCGGCCAGCGCAAGCGCGACAATGTGGTGTCCTCCGGGGCCGAGATTGTTGCCGCAGGCTGCCCT
GCCTGCATGATGCAGCTTGAAGACGTGCTCTCGCACAACAAGGACCGTGTGCGCGTCAAACATACCGTTGAAATATACGC
TGAAAGCCTGAAATAA

Upstream 100 bases:

>100_bases
CTCGCGCGGCACCATTCTGTTCTCTCAGCGGCTGCGTCGCGCCCTTGACCCCAAGGGCCTGTTCAACGCCACCAAGCTGG
TGGGAATCTAGGAGCCTTAC

Downstream 100 bases:

>100_bases
GAACGGCCGCTCCGGCGGGAAATTTCCCGCCGGAGCGGCGCGGCATGGCCGCGTAATCATGATGACCGAAAGGAGAATCC
TATGCCCCCTGTGAACCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MSNLHELAQRLMALDDKVTACMKCGMCQAVCPMFGASGMEADVARGKLALIDNLAHEMIQDPEAVADKLGRCLLCGSCQA
SCPPGVQIMDVFMEAREIVNAYLGLHPVKKMIFRAVLPQPGVFNLAMRMGAPVQGLIFRSTGSAQGTVCAPMLNFMLGDR
HMRPLAKKPLHARYGALDERRPAGGIKVAFYPGCMGDKMYTDMAEACLKVLRHHNVAVFMPKGLTCCGIPALSSGDAEGM
VKQMKVNLRALDGADFDYILSPCGSCTSTVKELWPRYAGRLGAAELRKAEQLAAKAMDINAFLVDVLKVQPAEAPAGNAT
TVTYHDSCHLKKSLGVVGQPRAVMAANPAYKVVEMAEADRCCGCGGSFNLFHYDYSRKIGQRKRDNVVSSGAEIVAAGCP
ACMMQLEDVLSHNKDRVRVKHTVEIYAESLK

Sequences:

>Translated_431_residues
MSNLHELAQRLMALDDKVTACMKCGMCQAVCPMFGASGMEADVARGKLALIDNLAHEMIQDPEAVADKLGRCLLCGSCQA
SCPPGVQIMDVFMEAREIVNAYLGLHPVKKMIFRAVLPQPGVFNLAMRMGAPVQGLIFRSTGSAQGTVCAPMLNFMLGDR
HMRPLAKKPLHARYGALDERRPAGGIKVAFYPGCMGDKMYTDMAEACLKVLRHHNVAVFMPKGLTCCGIPALSSGDAEGM
VKQMKVNLRALDGADFDYILSPCGSCTSTVKELWPRYAGRLGAAELRKAEQLAAKAMDINAFLVDVLKVQPAEAPAGNAT
TVTYHDSCHLKKSLGVVGQPRAVMAANPAYKVVEMAEADRCCGCGGSFNLFHYDYSRKIGQRKRDNVVSSGAEIVAAGCP
ACMMQLEDVLSHNKDRVRVKHTVEIYAESLK
>Mature_430_residues
SNLHELAQRLMALDDKVTACMKCGMCQAVCPMFGASGMEADVARGKLALIDNLAHEMIQDPEAVADKLGRCLLCGSCQAS
CPPGVQIMDVFMEAREIVNAYLGLHPVKKMIFRAVLPQPGVFNLAMRMGAPVQGLIFRSTGSAQGTVCAPMLNFMLGDRH
MRPLAKKPLHARYGALDERRPAGGIKVAFYPGCMGDKMYTDMAEACLKVLRHHNVAVFMPKGLTCCGIPALSSGDAEGMV
KQMKVNLRALDGADFDYILSPCGSCTSTVKELWPRYAGRLGAAELRKAEQLAAKAMDINAFLVDVLKVQPAEAPAGNATT
VTYHDSCHLKKSLGVVGQPRAVMAANPAYKVVEMAEADRCCGCGGSFNLFHYDYSRKIGQRKRDNVVSSGAEIVAAGCPA
CMMQLEDVLSHNKDRVRVKHTVEIYAESLK

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786497, Length=240, Percent_Identity=29.5833333333333, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI48994913, Length=433, Percent_Identity=24.4803695150115, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788576, Length=424, Percent_Identity=21.6981132075472, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 46596; Mature: 46465

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLHELAQRLMALDDKVTACMKCGMCQAVCPMFGASGMEADVARGKLALIDNLAHEMIQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHC
DPEAVADKLGRCLLCGSCQASCPPGVQIMDVFMEAREIVNAYLGLHPVKKMIFRAVLPQP
CHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVFNLAMRMGAPVQGLIFRSTGSAQGTVCAPMLNFMLGDRHMRPLAKKPLHARYGALDER
CHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCHHCCHHHCCCCHHHHCCCCCC
RPAGGIKVAFYPGCMGDKMYTDMAEACLKVLRHHNVAVFMPKGLTCCGIPALSSGDAEGM
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCCCCCCCCHHHH
VKQMKVNLRALDGADFDYILSPCGSCTSTVKELWPRYAGRLGAAELRKAEQLAAKAMDIN
HHHHHHHHEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AFLVDVLKVQPAEAPAGNATTVTYHDSCHLKKSLGVVGQPRAVMAANPAYKVVEMAEADR
HHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCC
CCGCGGSFNLFHYDYSRKIGQRKRDNVVSSGAEIVAAGCPACMMQLEDVLSHNKDRVRVK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCEEEH
HTVEIYAESLK
HHHHHHHHHCC
>Mature Secondary Structure 
SNLHELAQRLMALDDKVTACMKCGMCQAVCPMFGASGMEADVARGKLALIDNLAHEMIQ
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHC
DPEAVADKLGRCLLCGSCQASCPPGVQIMDVFMEAREIVNAYLGLHPVKKMIFRAVLPQP
CHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVFNLAMRMGAPVQGLIFRSTGSAQGTVCAPMLNFMLGDRHMRPLAKKPLHARYGALDER
CHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCHHCCHHHCCCCHHHHCCCCCC
RPAGGIKVAFYPGCMGDKMYTDMAEACLKVLRHHNVAVFMPKGLTCCGIPALSSGDAEGM
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCCCCCCCCHHHH
VKQMKVNLRALDGADFDYILSPCGSCTSTVKELWPRYAGRLGAAELRKAEQLAAKAMDIN
HHHHHHHHEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AFLVDVLKVQPAEAPAGNATTVTYHDSCHLKKSLGVVGQPRAVMAANPAYKVVEMAEADR
HHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCC
CCGCGGSFNLFHYDYSRKIGQRKRDNVVSSGAEIVAAGCPACMMQLEDVLSHNKDRVRVK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCEEEH
HTVEIYAESLK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]