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The map label for this gene is oprF [H]

Identifier: 220905238

GI number: 220905238

Start: 2378325

End: 2379320

Strand: Reverse

Name: oprF [H]

Synonym: Ddes_1976

Alternate gene names: 220905238

Gene position: 2379320-2378325 (Counterclockwise)

Preceding gene: 220905244

Following gene: 220905237

Centisome position: 82.8

GC content: 57.43

Gene sequence:

>996_bases
ATGAAATCGTTTCGTCTTCTTGTTCTGGCCGCTGCTCTTATTTTGAGCTATGCTGTGGCCGCCGCGGCCGCTCCGGCCTG
CACCAAGAAAATCAACAGCTTTGACTTCGTTGTAGACTATTCCGGCTCCATGATGATGAAAAATGCCCAGCTGAAGCAGG
ACAAGATCATCGTGGCCAAAAATGTGCTGCAGCGCATCAATGCCGCTATTCCCGCTCTGGACTACAATGGTGGCCTGCAC
ACCATTTCGCCCAACGGCGTTATCGTTGCCCAGGGCCCCTGGGATCGCAACACCATGGCTGCCGGCATCAAAAAGCTGCG
CTCCGACTTCCAGATCTTCGGTCGTATGACCAGCATGGGCACCGGCCTGCAGGCTTATGAGCCTTTCCTCTCCAGCATGA
AGCGCGACGCCGCCGTTATCCTCGTGACCGACGGCGACAACAACCGTGGCGCCGATCTGGTGGAAGTGGCCCGTCAGATG
TATGCCAGCCAGCGTAACCTGGTTGTCCACATCATCTCCTTTGCCGACAGCAAGAACGGCGAAGAAACCATCAAGCAGGT
TGCTGCCCTGAACCCCGCCACCATCGTGGTGCGTGGTGAAGAACTGGCCACCAGCGATGCCGCTCTTGAGCGCTTCGTTC
TGTCCGTGTTCTGCCAGGATGAAGACGTGATTGTGCTGCGTGGCGTGCACTTCGCTTTCAACTCCTATGCCCTTGACGGT
AAGGCCATGGGCATCCTGAACGAAGCCGCCGGTCTCATCAAGGCCAACCCCAACAAGCGCGTTGTGCTCGCTGGCTGGAC
CGACTGGATCGGCTCTGACGCCTACAACATGAAGCTTTCGCAGGAACGCGCCAACAGCGTGAAGAACTATCTTGTGAAGC
AGGGCATCCCCGCCAGCCGCATGACCGCCATCGGTCGCGGCAAGTCCTTCAAGTACAACAACGAAACCGCTGAAGGTCGC
GCCATGAACCGGCGCACCGAAATCTCCTTCGAATAA

Upstream 100 bases:

>100_bases
AAAGGTATTTCCTGCTAGTGAGTTGGCAACGTGGCGGGCACACCGCGAATTACTGTTATTGACGGTAACTCGACGAACTT
ATCAACGTTTGGGAGGCAGT

Downstream 100 bases:

>100_bases
TCGAAGGGCGGGTTTCAGTGGAATAGCATGCAAAAGCCGGGTGGCCTATGCCGCCCGGCTTTAATGTGTGAGGTGCTATG
CGCAAGCAAATATTTTGGGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKSFRLLVLAAALILSYAVAAAAAPACTKKINSFDFVVDYSGSMMMKNAQLKQDKIIVAKNVLQRINAAIPALDYNGGLH
TISPNGVIVAQGPWDRNTMAAGIKKLRSDFQIFGRMTSMGTGLQAYEPFLSSMKRDAAVILVTDGDNNRGADLVEVARQM
YASQRNLVVHIISFADSKNGEETIKQVAALNPATIVVRGEELATSDAALERFVLSVFCQDEDVIVLRGVHFAFNSYALDG
KAMGILNEAAGLIKANPNKRVVLAGWTDWIGSDAYNMKLSQERANSVKNYLVKQGIPASRMTAIGRGKSFKYNNETAEGR
AMNRRTEISFE

Sequences:

>Translated_331_residues
MKSFRLLVLAAALILSYAVAAAAAPACTKKINSFDFVVDYSGSMMMKNAQLKQDKIIVAKNVLQRINAAIPALDYNGGLH
TISPNGVIVAQGPWDRNTMAAGIKKLRSDFQIFGRMTSMGTGLQAYEPFLSSMKRDAAVILVTDGDNNRGADLVEVARQM
YASQRNLVVHIISFADSKNGEETIKQVAALNPATIVVRGEELATSDAALERFVLSVFCQDEDVIVLRGVHFAFNSYALDG
KAMGILNEAAGLIKANPNKRVVLAGWTDWIGSDAYNMKLSQERANSVKNYLVKQGIPASRMTAIGRGKSFKYNNETAEGR
AMNRRTEISFE
>Mature_331_residues
MKSFRLLVLAAALILSYAVAAAAAPACTKKINSFDFVVDYSGSMMMKNAQLKQDKIIVAKNVLQRINAAIPALDYNGGLH
TISPNGVIVAQGPWDRNTMAAGIKKLRSDFQIFGRMTSMGTGLQAYEPFLSSMKRDAAVILVTDGDNNRGADLVEVARQM
YASQRNLVVHIISFADSKNGEETIKQVAALNPATIVVRGEELATSDAALERFVLSVFCQDEDVIVLRGVHFAFNSYALDG
KAMGILNEAAGLIKANPNKRVVLAGWTDWIGSDAYNMKLSQERANSVKNYLVKQGIPASRMTAIGRGKSFKYNNETAEGR
AMNRRTEISFE

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=39.4230769230769, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 36081; Mature: 36081

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50234 VWFA ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFRLLVLAAALILSYAVAAAAAPACTKKINSFDFVVDYSGSMMMKNAQLKQDKIIVAK
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCEEEECCCCCCCHHHHHH
NVLQRINAAIPALDYNGGLHTISPNGVIVAQGPWDRNTMAAGIKKLRSDFQIFGRMTSMG
HHHHHHHHHCCCEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
TGLQAYEPFLSSMKRDAAVILVTDGDNNRGADLVEVARQMYASQRNLVVHIISFADSKNG
CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCH
EETIKQVAALNPATIVVRGEELATSDAALERFVLSVFCQDEDVIVLRGVHFAFNSYALDG
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEECC
KAMGILNEAAGLIKANPNKRVVLAGWTDWIGSDAYNMKLSQERANSVKNYLVKQGIPASR
HHHHHHHHHCCEEEECCCCEEEEEECHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCHHH
MTAIGRGKSFKYNNETAEGRAMNRRTEISFE
HHHHCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSFRLLVLAAALILSYAVAAAAAPACTKKINSFDFVVDYSGSMMMKNAQLKQDKIIVAK
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCEEEECCCCCCCHHHHHH
NVLQRINAAIPALDYNGGLHTISPNGVIVAQGPWDRNTMAAGIKKLRSDFQIFGRMTSMG
HHHHHHHHHCCCEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
TGLQAYEPFLSSMKRDAAVILVTDGDNNRGADLVEVARQMYASQRNLVVHIISFADSKNG
CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCH
EETIKQVAALNPATIVVRGEELATSDAALERFVLSVFCQDEDVIVLRGVHFAFNSYALDG
HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEECC
KAMGILNEAAGLIKANPNKRVVLAGWTDWIGSDAYNMKLSQERANSVKNYLVKQGIPASR
HHHHHHHHHCCEEEECCCCEEEEEECHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCHHH
MTAIGRGKSFKYNNETAEGRAMNRRTEISFE
HHHHCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]