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The map label for this gene is secD [H]

Identifier: 220905191

GI number: 220905191

Start: 2322307

End: 2323887

Strand: Reverse

Name: secD [H]

Synonym: Ddes_1929

Alternate gene names: 220905191

Gene position: 2323887-2322307 (Counterclockwise)

Preceding gene: 220905192

Following gene: 220905190

Centisome position: 80.87

GC content: 61.1

Gene sequence:

>1581_bases
ATGGGTCTGCGCTGGCGCCTGATCTTGGCTTCGTTGGTATTTCTTGTTTCTCTTGTGTACGCGCTGCCGAGCGTGCCCGT
TATCGGGCCTGCCCTGGAGCGCGTTTTGCCGTCCAGCAAGATCAATCTCGGTCTTGACCTCAAGGGGGGCATACACCTGA
CTTTGGGCGTGGACGTGGCCAAGGCCGTGAGCAATTCCCTGGCTCTGGCCGGGCAGGATCTGCGCCGTATGGCCCAGGAT
GAAAAGATCATTGTGCTGCGCCCCCGCGTTGTGGGCGGCACAACCCTTGAATTCATTCTGCCCCGCGCTGAAAACGAGAG
CAAGCTGCGCGAGATTCTGGCCCGTCATTTCCCCCAGTTGAGCGTGGCCCAGCCCCTGGCGGGCGAAGGCGGCCAGTTGC
GCTATGTAGCCCACTTCACCCCGGCCGAAGTGAAAAGACTTGAAGACATGGCCCTTGACCAGGCACTGCGCACTATCCGT
AACCGTATTGACCAGTTCGGTGTGGCCGAACCCGACATACGCAAGCAGGCCGGCAACCGCATTCAGGTGCAGCTGCCCGG
CATTTCCGATCCGCGCCGCGCTGTGCAGATTATCGGCCAGACGGCCCATCTGGAATTTCATCTGGTCCGGGAGGATGTGG
ACCCCGGCAAGGCTGTGCTGCCTCCCGGGGTTGTCGTTCTGCCCATGCTTGAGAAAAATCCCGGGCAGCAGGCGGCCGAA
GGCCGTATTGCGGTTGAAAAGGACGCCATGCTCACCGGCGAAGATGTGGCTGATGCCCGTCCTGCCTTTGACAACATGAA
CCAGTCGTATGTGACCATGAGCTTCAACGCCCGCGGAGCGCGTATTTTTGAGCGCGTCACCGGTGAAAGCGTGGGGCGGC
GCATGGCCATTGTGCTGGACGGCAAGGTGTATTCCGCCCCTGTTATCCGTGAGCGCATCGGCGGCGGTAAGGCCAGCATC
TCGGGTAACTTCACCACCGCCGAGGCCCAGGACCTGGCTATTGTGCTGCGGGCCGGCTCGCTGCCTGCGCCTGTTTCGGT
GCTTGAAGAACGCAGCGTTGGCCCCTCCCTTGGGCAGGAAGCCATTGACAGCGGCATCAGTGCGGCCCTGGTGGGCGCAG
CCGCCGTGGTCATTTTTATTGGTTTCTATTACGGCGTCAGCGGCCTTATTGCCGACCTCATGCTGTGTTTCACCATGCTT
ATCGTCATGGCCGGCATGGGCGCGTTCGGCGCGACCCTGACCCTGCCGGGCATTGCGGGCATAGTGCTGACCATCGGCAT
GGCGGTGGACGCCAACGTGCTCATCTACGAACGAATACGCGAAGAGCTGCGGCTGGGGCTAACACCGCTGGCGGCAGTGC
GCGCGGGTTTTGACCGGGCCATGGTTTCCATTACGGACGCCAACCTGACCTCCATTATTGTCACGGTCATTCTGTACCAG
TTCGGCACAGGCCCCATCAGAGGCTTTGCGGTAACCCTGGGGCTGGGCATTGTTGCCTCCATGTTTACGGCCATCTTCGT
TTCGCGGGCCATTTTTGAAGAATGGGCGCGCCATTGCGGTCCCAAGGGCCTGAGCATATAG

Upstream 100 bases:

>100_bases
CGCCGTGGGCGTCCGCCCTGCCCACGGCCTGCAAGGCTCCGGGCGTGCAGTGCCCATCTGGGCATGCTGTGCTTTAAATC
TGTTGTCTGGAAGGTGAACG

Downstream 100 bases:

>100_bases
CGCGCCGGGAGGCTGTCATGAGTTTTACCTTTGTCAAGCACGACACCAATATCGATTTCATTGGCAAGCGCTACTGGGTG
TACGGCATTTCCGTAGCCCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MGLRWRLILASLVFLVSLVYALPSVPVIGPALERVLPSSKINLGLDLKGGIHLTLGVDVAKAVSNSLALAGQDLRRMAQD
EKIIVLRPRVVGGTTLEFILPRAENESKLREILARHFPQLSVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIR
NRIDQFGVAEPDIRKQAGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQQAAE
GRIAVEKDAMLTGEDVADARPAFDNMNQSYVTMSFNARGARIFERVTGESVGRRMAIVLDGKVYSAPVIRERIGGGKASI
SGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGPSLGQEAIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTML
IVMAGMGAFGATLTLPGIAGIVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVTVILYQ
FGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI

Sequences:

>Translated_526_residues
MGLRWRLILASLVFLVSLVYALPSVPVIGPALERVLPSSKINLGLDLKGGIHLTLGVDVAKAVSNSLALAGQDLRRMAQD
EKIIVLRPRVVGGTTLEFILPRAENESKLREILARHFPQLSVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIR
NRIDQFGVAEPDIRKQAGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQQAAE
GRIAVEKDAMLTGEDVADARPAFDNMNQSYVTMSFNARGARIFERVTGESVGRRMAIVLDGKVYSAPVIRERIGGGKASI
SGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGPSLGQEAIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTML
IVMAGMGAFGATLTLPGIAGIVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVTVILYQ
FGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI
>Mature_525_residues
GLRWRLILASLVFLVSLVYALPSVPVIGPALERVLPSSKINLGLDLKGGIHLTLGVDVAKAVSNSLALAGQDLRRMAQDE
KIIVLRPRVVGGTTLEFILPRAENESKLREILARHFPQLSVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIRN
RIDQFGVAEPDIRKQAGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQQAAEG
RIAVEKDAMLTGEDVADARPAFDNMNQSYVTMSFNARGARIFERVTGESVGRRMAIVLDGKVYSAPVIRERIGGGKASIS
GNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGPSLGQEAIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTMLI
VMAGMGAFGATLTLPGIAGIVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVTVILYQF
GTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=517, Percent_Identity=36.5570599613153, Blast_Score=277, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56193; Mature: 56061

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRWRLILASLVFLVSLVYALPSVPVIGPALERVLPSSKINLGLDLKGGIHLTLGVDVA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEECCHHH
KAVSNSLALAGQDLRRMAQDEKIIVLRPRVVGGTTLEFILPRAENESKLREILARHFPQL
HHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
SVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIRNRIDQFGVAEPDIRKQAGNR
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE
IQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQQAAE
EEEEECCCCCHHHHHHHHCCHHCEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCHHHC
GRIAVEKDAMLTGEDVADARPAFDNMNQSYVTMSFNARGARIFERVTGESVGRRMAIVLD
CCEEEECCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEEC
GKVYSAPVIRERIGGGKASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGPSLGQE
CCCCCCHHHHHHCCCCCEEECCCCEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHH
AIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTMLIVMAGMGAFGATLTLPGIAG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHH
IVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVTVILYQ
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHH
FGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLRWRLILASLVFLVSLVYALPSVPVIGPALERVLPSSKINLGLDLKGGIHLTLGVDVA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEECCHHH
KAVSNSLALAGQDLRRMAQDEKIIVLRPRVVGGTTLEFILPRAENESKLREILARHFPQL
HHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
SVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIRNRIDQFGVAEPDIRKQAGNR
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE
IQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQQAAE
EEEEECCCCCHHHHHHHHCCHHCEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCHHHC
GRIAVEKDAMLTGEDVADARPAFDNMNQSYVTMSFNARGARIFERVTGESVGRRMAIVLD
CCEEEECCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEEC
GKVYSAPVIRERIGGGKASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGPSLGQE
CCCCCCHHHHHHCCCCCEEECCCCEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHH
AIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTMLIVMAGMGAFGATLTLPGIAG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHH
IVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVTVILYQ
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHH
FGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA