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The map label for this gene is ybdM [H]

Identifier: 220904843

GI number: 220904843

Start: 1897521

End: 1898138

Strand: Reverse

Name: ybdM [H]

Synonym: Ddes_1577

Alternate gene names: 220904843

Gene position: 1898138-1897521 (Counterclockwise)

Preceding gene: 220904844

Following gene: 220904842

Centisome position: 66.06

GC content: 57.12

Gene sequence:

>618_bases
ATGGAACTTGAGCAATGGATAAATTCTCTGGAAGACGCGCTGCTGTCTGATACCCGCCGTTTTGACCAGCGGGTGAAAGT
ATATAACCGTCTTGTGGATATGGCCGCCCGGTATCTGGATACGCCTCATCCGGCCGCGCGCCCTCAGTTGGTGCGCGTGG
ACAAGGTTAAAGGCAACGATTACAACCCCAACAAGGTCGCGCCGCCTGAAATGCGTTTGCTGCGCCTGTCCATGGCTAAA
GACGGCCAGACCATGCCTGTGGTTGTGGCCCGGGGCAGCAGGGGCGCCTTTCAGATTGTGGACGGCTTTCATCGCCGCAG
CGTCGCAAAAAATGCGCCCGAAGTTCGCGAGGCCCTTTCGGGATATCTTTTCATCGTTGAGCTGGACAAGCCTTTTGAAG
ACAGGATTACGTCCACGGTCCGGCATAACATGGCCAGAGGCGCGCACAAGGTCGAGCTGACGGCAAAGCTGGTGACTGCC
CTGAAAGGCTATAACTGGAGCAGCGAGCGTATTGGCCGGGAGCTGGGTATGGACCCTGACGAAGTCCTGCGGCTGAAGCA
GATGACTGGTCTGGCCGAAGCTTTTGCAGACAGGGAATTTTCCAGGGCCTGGGAATAG

Upstream 100 bases:

>100_bases
TATATATGGCTGGAATCACGCTATGCGCCGCTGGGCTTTATGCCGCACGGGAACCCCAGAGGCCGATTTGTTCAATATGT
GTTATGGTTAGGGGAGTCCA

Downstream 100 bases:

>100_bases
CCGCGCCGTACCGTATTGTGAGTTCGTGGCAGCAGGCATGCGGACTGGCGGGACCGGTGTTTTTTCTCTTGTGCCTGCGC
TGGTCGCGCCCTGTGCGGAC

Product: ParB domain-containing protein nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MELEQWINSLEDALLSDTRRFDQRVKVYNRLVDMAARYLDTPHPAARPQLVRVDKVKGNDYNPNKVAPPEMRLLRLSMAK
DGQTMPVVVARGSRGAFQIVDGFHRRSVAKNAPEVREALSGYLFIVELDKPFEDRITSTVRHNMARGAHKVELTAKLVTA
LKGYNWSSERIGRELGMDPDEVLRLKQMTGLAEAFADREFSRAWE

Sequences:

>Translated_205_residues
MELEQWINSLEDALLSDTRRFDQRVKVYNRLVDMAARYLDTPHPAARPQLVRVDKVKGNDYNPNKVAPPEMRLLRLSMAK
DGQTMPVVVARGSRGAFQIVDGFHRRSVAKNAPEVREALSGYLFIVELDKPFEDRITSTVRHNMARGAHKVELTAKLVTA
LKGYNWSSERIGRELGMDPDEVLRLKQMTGLAEAFADREFSRAWE
>Mature_205_residues
MELEQWINSLEDALLSDTRRFDQRVKVYNRLVDMAARYLDTPHPAARPQLVRVDKVKGNDYNPNKVAPPEMRLLRLSMAK
DGQTMPVVVARGSRGAFQIVDGFHRRSVAKNAPEVREALSGYLFIVELDKPFEDRITSTVRHNMARGAHKVELTAKLVTA
LKGYNWSSERIGRELGMDPDEVLRLKQMTGLAEAFADREFSRAWE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=205, Percent_Identity=40.9756097560976, Blast_Score=160, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23410; Mature: 23410

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEQWINSLEDALLSDTRRFDQRVKVYNRLVDMAARYLDTPHPAARPQLVRVDKVKGND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
YNPNKVAPPEMRLLRLSMAKDGQTMPVVVARGSRGAFQIVDGFHRRSVAKNAPEVREALS
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GYLFIVELDKPFEDRITSTVRHNMARGAHKVELTAKLVTALKGYNWSSERIGRELGMDPD
CEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH
EVLRLKQMTGLAEAFADREFSRAWE
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELEQWINSLEDALLSDTRRFDQRVKVYNRLVDMAARYLDTPHPAARPQLVRVDKVKGND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
YNPNKVAPPEMRLLRLSMAKDGQTMPVVVARGSRGAFQIVDGFHRRSVAKNAPEVREALS
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GYLFIVELDKPFEDRITSTVRHNMARGAHKVELTAKLVTALKGYNWSSERIGRELGMDPD
CEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH
EVLRLKQMTGLAEAFADREFSRAWE
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]