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The map label for this gene is rnfC [H]

Identifier: 220904638

GI number: 220904638

Start: 1643137

End: 1644462

Strand: Direct

Name: rnfC [H]

Synonym: Ddes_1370

Alternate gene names: 220904638

Gene position: 1643137-1644462 (Clockwise)

Preceding gene: 220904637

Following gene: 220904639

Centisome position: 57.18

GC content: 59.73

Gene sequence:

>1326_bases
ATGGGAAAAGCAATTGTAGACGCCATACGCCAGGCTGGCGTTGTAGGCGCTGGCGGGGCGGGACTGCCCACCCATGTAAA
GGCTGACGCCACGGCGCAAACTGTGCTGGTCAACGGCGCCAGCTGCGAACCCCTGCTCATGAGCGACCCCTACCTTATGG
AAGAGCAGGTAGACGTCATGCTGCGCGGCCTTGAGGCCATGATGGACTGTACCGGCGCGAACCGTGGTGTTGTCTGCCTT
AAGGGCAAACACGCCGCCGCCATGAAGAGTGTACGCGAAGCCGTGGCCCGACGCGGGCAAGGCCGCCTTGAAGCGTTTGA
AATGGGCGACTTCTACCCTGCCGGCGACGAACAGGTTATGGTTTACGAAGTGCTGGGCGGCATTGTACCCGAGCGCGGTA
TACCGCTGCAGATCGGCGCTGTGGTCAGCAACGTGGAAAGCCTTTTCAATATTGCTCACGCGCTGGACGGCAAGCCTGTC
ACCCACCGTTACCTTACGGTCGGTTGTGAAGTGGTCCGGCCCATGGTGGTGCGGGTACCTGTAGGAACCCGTGTGGCCGA
AGTGCTCAATTTTGCCGGTGGAACCACCATCAGCGAATACCGCGTGGTGGACGGCGGTCCCATGATGGGCCGTGTGCTGC
CCGATGCGGACCAGCCGGTTACAAAAACCACCAGCGGTCTGCTGGTACTGCCGCCGGACCATAATGTGGTGAACCGCAAG
GTAATGGACCCGCATGTGGTCAAGCGCCTCACAAACACCGTATGCTGTCAATGCTCTCAATGCACGGACCTCTGCCCCCG
CAACCTGCTCGGGCACAAGTTGCACCCGCACAAGCTCATGCGTGTTCTCGACGGGCAGACCATCAGCAATCCTGTGGCGA
AAGAGGCCCTGCTCTGCTCCGAATGCGGCATTTGTGAAAAGTTCGCCTGCCCTATGGGTCTTTCACCTCGTGAAGTCAAT
GCCATGCTCAAGCAGGAGCTTATGAAGGCAGGCATCAAATGGGAATATGACGGACGTCCCCTTGCCACATCCCGCTTTCG
CGAGGAACGCCGCATCCCCACAAGCCGCCTTGTGAGCCGTCTCGGCCTGGCGGATTACGAGGCCCATCCCCCATTTGCCG
GGGACTTTGAGCCGACAGAGGTACGTATTCCGCTGAAGCAGCATATCGGCGCTCCCGCCCTGTCTGTGGTTTCTGTGGGC
CAGAGCGTCAATGTGGGCGATCTTATCGGCGAAATCCCCGAAGGGGCTATGGGCGCACGCGTACATGCCAGTATCAAAGG
TACGGTCAGCGCGATTGAAAACGGCATCATCACCATCAAGGCCTGA

Upstream 100 bases:

>100_bases
CTTATCCCGCCTTGCTGCGCGGGGCTTCGCACCGTCAGGCACTGCGCCTTGCACGGAATTTTCAATGATGAAATGCTCTA
AAATCACCCGAGAGGAAACC

Downstream 100 bases:

>100_bases
GGGGGAAGGGCATGAAATTACGTACTATCGGCTGCGTTGAACTGAGCAGCATCGGCATGGGCATTCAAACGGCTGACGAA
ATGGTCAAGGCCGCCAATGT

Product: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MGKAIVDAIRQAGVVGAGGAGLPTHVKADATAQTVLVNGASCEPLLMSDPYLMEEQVDVMLRGLEAMMDCTGANRGVVCL
KGKHAAAMKSVREAVARRGQGRLEAFEMGDFYPAGDEQVMVYEVLGGIVPERGIPLQIGAVVSNVESLFNIAHALDGKPV
THRYLTVGCEVVRPMVVRVPVGTRVAEVLNFAGGTTISEYRVVDGGPMMGRVLPDADQPVTKTTSGLLVLPPDHNVVNRK
VMDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPHKLMRVLDGQTISNPVAKEALLCSECGICEKFACPMGLSPREVN
AMLKQELMKAGIKWEYDGRPLATSRFREERRIPTSRLVSRLGLADYEAHPPFAGDFEPTEVRIPLKQHIGAPALSVVSVG
QSVNVGDLIGEIPEGAMGARVHASIKGTVSAIENGIITIKA

Sequences:

>Translated_441_residues
MGKAIVDAIRQAGVVGAGGAGLPTHVKADATAQTVLVNGASCEPLLMSDPYLMEEQVDVMLRGLEAMMDCTGANRGVVCL
KGKHAAAMKSVREAVARRGQGRLEAFEMGDFYPAGDEQVMVYEVLGGIVPERGIPLQIGAVVSNVESLFNIAHALDGKPV
THRYLTVGCEVVRPMVVRVPVGTRVAEVLNFAGGTTISEYRVVDGGPMMGRVLPDADQPVTKTTSGLLVLPPDHNVVNRK
VMDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPHKLMRVLDGQTISNPVAKEALLCSECGICEKFACPMGLSPREVN
AMLKQELMKAGIKWEYDGRPLATSRFREERRIPTSRLVSRLGLADYEAHPPFAGDFEPTEVRIPLKQHIGAPALSVVSVG
QSVNVGDLIGEIPEGAMGARVHASIKGTVSAIENGIITIKA
>Mature_440_residues
GKAIVDAIRQAGVVGAGGAGLPTHVKADATAQTVLVNGASCEPLLMSDPYLMEEQVDVMLRGLEAMMDCTGANRGVVCLK
GKHAAAMKSVREAVARRGQGRLEAFEMGDFYPAGDEQVMVYEVLGGIVPERGIPLQIGAVVSNVESLFNIAHALDGKPVT
HRYLTVGCEVVRPMVVRVPVGTRVAEVLNFAGGTTISEYRVVDGGPMMGRVLPDADQPVTKTTSGLLVLPPDHNVVNRKV
MDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPHKLMRVLDGQTISNPVAKEALLCSECGICEKFACPMGLSPREVNA
MLKQELMKAGIKWEYDGRPLATSRFREERRIPTSRLVSRLGLADYEAHPPFAGDFEPTEVRIPLKQHIGAPALSVVSVGQ
SVNVGDLIGEIPEGAMGARVHASIKGTVSAIENGIITIKA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=359, Percent_Identity=28.6908077994429, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47201; Mature: 47069

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKAIVDAIRQAGVVGAGGAGLPTHVKADATAQTVLVNGASCEPLLMSDPYLMEEQVDVM
CCHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEECCCCCHHHHHHHHH
LRGLEAMMDCTGANRGVVCLKGKHAAAMKSVREAVARRGQGRLEAFEMGDFYPAGDEQVM
HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEE
VYEVLGGIVPERGIPLQIGAVVSNVESLFNIAHALDGKPVTHRYLTVGCEVVRPMVVRVP
HHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEC
VGTRVAEVLNFAGGTTISEYRVVDGGPMMGRVLPDADQPVTKTTSGLLVLPPDHNVVNRK
CCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCC
VMDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPHKLMRVLDGQTISNPVAKEALLCS
CCCHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
ECGICEKFACPMGLSPREVNAMLKQELMKAGIKWEYDGRPLATSRFREERRIPTSRLVSR
HCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCHHHHHHH
LGLADYEAHPPFAGDFEPTEVRIPLKQHIGAPALSVVSVGQSVNVGDLIGEIPEGAMGAR
HCCCCCCCCCCCCCCCCCCEEEECHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCE
VHASIKGTVSAIENGIITIKA
EEEEHHHHHHHHHCCEEEEEC
>Mature Secondary Structure 
GKAIVDAIRQAGVVGAGGAGLPTHVKADATAQTVLVNGASCEPLLMSDPYLMEEQVDVM
CHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEECCCCCHHHHHHHHH
LRGLEAMMDCTGANRGVVCLKGKHAAAMKSVREAVARRGQGRLEAFEMGDFYPAGDEQVM
HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEE
VYEVLGGIVPERGIPLQIGAVVSNVESLFNIAHALDGKPVTHRYLTVGCEVVRPMVVRVP
HHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEC
VGTRVAEVLNFAGGTTISEYRVVDGGPMMGRVLPDADQPVTKTTSGLLVLPPDHNVVNRK
CCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCC
VMDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPHKLMRVLDGQTISNPVAKEALLCS
CCCHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
ECGICEKFACPMGLSPREVNAMLKQELMKAGIKWEYDGRPLATSRFREERRIPTSRLVSR
HCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCHHHHHHH
LGLADYEAHPPFAGDFEPTEVRIPLKQHIGAPALSVVSVGQSVNVGDLIGEIPEGAMGAR
HCCCCCCCCCCCCCCCCCCEEEECHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCE
VHASIKGTVSAIENGIITIKA
EEEEHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]