Click here to switch to the map view.

The map label for this gene is ybbI [C]

Identifier: 220904620

GI number: 220904620

Start: 1625721

End: 1626587

Strand: Reverse

Name: ybbI [C]

Synonym: Ddes_1352

Alternate gene names: 220904620

Gene position: 1626587-1625721 (Counterclockwise)

Preceding gene: 220904621

Following gene: 220904619

Centisome position: 56.61

GC content: 50.63

Gene sequence:

>867_bases
ATGACAAAACGAAGATATTCCATCAGCCAGATGAGCGAGATTTCCAATATCTCGAAGAAAGCCCTGCGCTTTTACGATGA
TCTTGGCCTGATCGAATCCAAGCGGCACGGAGCCAACAATTACCGCTATTATACACAGGAAGACCTGTTGGCAGTGCCGC
CGCTGAAATATTACAAGCAGATGGGATTTCACCTTGGTGAAATCCGCGAAGCCTTCGAATTGGGCAGCAATACCTCGCTT
ACGGCCTTACGCAAAATTTTTATGAAAAAGATCGAAGGGCTTCAGGAAGAAGAAAGAACCCTGCACCTTCGCCTCACCTC
GGTGCGCGACTGGCTTGAGTTGCTGCACGAGGCTGAGATGGTGCTTGAGAATGGTCTGCACAGTGTATCGGTAAAGTACG
TGCAGCCGGACGACCTGCTCTTTCATGACCAGACTTTTTCATCCGATATCAAATCTGCCATCATAAATCTTGAATTTACC
AACTATGTGGAGTCGGTGAGCAACAGCATCACCGGACCGGTCATGATCCGTTTTTCTTCCATTGAAGACCGCATCAAGGA
TGAGCCTCAGAACGTACAGATCCTGCAGAAGACCATCCTCCCCTGTCAGCCGGAAGAAACGCAGCCGTACGGGGGCTTTC
TCGCGGCATGCTGCTATCATATCGGGGAGCACGGGGCTATCCGCGATACCTACAGGAAAATCCAGCGCTGGTGCGCATCG
AACAACTATATTTGCGATCAGGGTTCGTATGAGCGCTACGTGACCGACTTCTGGACCACCAATCACGAAGAGCTTTTTGT
TACCGAGGTGCTTGTGAAAGTCAGCCGCCCCGGAAATGTACGCAGCCTTATGGCAAAGGCAGACTGA

Upstream 100 bases:

>100_bases
GCTTTTAGGGCGATACGTCTGCGACCCATTACGGTCACGGGCTGTCATCCTGCCGGGCATCGCCCCTATTGCCCCTCTGT
ACAGGATTTCGGGTACTGTC

Downstream 100 bases:

>100_bases
ACGCCTGGCGCAGCAGTGCCAACAGTTCCATAACGGCCTGAATTATGACGCGCCCGTCGCAGAGCCGGAGGTTCTCATGC
AGGGATTGACCCTGGCCCGT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulatory Protein; MerR Family Transcriptional Regulator; Multidrug ABC Transporter

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTKRRYSISQMSEISNISKKALRFYDDLGLIESKRHGANNYRYYTQEDLLAVPPLKYYKQMGFHLGEIREAFELGSNTSL
TALRKIFMKKIEGLQEEERTLHLRLTSVRDWLELLHEAEMVLENGLHSVSVKYVQPDDLLFHDQTFSSDIKSAIINLEFT
NYVESVSNSITGPVMIRFSSIEDRIKDEPQNVQILQKTILPCQPEETQPYGGFLAACCYHIGEHGAIRDTYRKIQRWCAS
NNYICDQGSYERYVTDFWTTNHEELFVTEVLVKVSRPGNVRSLMAKAD

Sequences:

>Translated_288_residues
MTKRRYSISQMSEISNISKKALRFYDDLGLIESKRHGANNYRYYTQEDLLAVPPLKYYKQMGFHLGEIREAFELGSNTSL
TALRKIFMKKIEGLQEEERTLHLRLTSVRDWLELLHEAEMVLENGLHSVSVKYVQPDDLLFHDQTFSSDIKSAIINLEFT
NYVESVSNSITGPVMIRFSSIEDRIKDEPQNVQILQKTILPCQPEETQPYGGFLAACCYHIGEHGAIRDTYRKIQRWCAS
NNYICDQGSYERYVTDFWTTNHEELFVTEVLVKVSRPGNVRSLMAKAD
>Mature_287_residues
TKRRYSISQMSEISNISKKALRFYDDLGLIESKRHGANNYRYYTQEDLLAVPPLKYYKQMGFHLGEIREAFELGSNTSLT
ALRKIFMKKIEGLQEEERTLHLRLTSVRDWLELLHEAEMVLENGLHSVSVKYVQPDDLLFHDQTFSSDIKSAIINLEFTN
YVESVSNSITGPVMIRFSSIEDRIKDEPQNVQILQKTILPCQPEETQPYGGFLAACCYHIGEHGAIRDTYRKIQRWCASN
NYICDQGSYERYVTDFWTTNHEELFVTEVLVKVSRPGNVRSLMAKAD

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33397; Mature: 33266

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRRYSISQMSEISNISKKALRFYDDLGLIESKRHGANNYRYYTQEDLLAVPPLKYYKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEECCCCCEECCCHHHHHH
MGFHLGEIREAFELGSNTSLTALRKIFMKKIEGLQEEERTLHLRLTSVRDWLELLHEAEM
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHEEEEHHHHHHHHHHHHHHHHH
VLENGLHSVSVKYVQPDDLLFHDQTFSSDIKSAIINLEFTNYVESVSNSITGPVMIRFSS
HHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECC
IEDRIKDEPQNVQILQKTILPCQPEETQPYGGFLAACCYHIGEHGAIRDTYRKIQRWCAS
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
NNYICDQGSYERYVTDFWTTNHEELFVTEVLVKVSRPGNVRSLMAKAD
CCEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure 
TKRRYSISQMSEISNISKKALRFYDDLGLIESKRHGANNYRYYTQEDLLAVPPLKYYKQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEECCCCCEECCCHHHHHH
MGFHLGEIREAFELGSNTSLTALRKIFMKKIEGLQEEERTLHLRLTSVRDWLELLHEAEM
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHEEEEHHHHHHHHHHHHHHHHH
VLENGLHSVSVKYVQPDDLLFHDQTFSSDIKSAIINLEFTNYVESVSNSITGPVMIRFSS
HHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECC
IEDRIKDEPQNVQILQKTILPCQPEETQPYGGFLAACCYHIGEHGAIRDTYRKIQRWCAS
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
NNYICDQGSYERYVTDFWTTNHEELFVTEVLVKVSRPGNVRSLMAKAD
CCEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA