| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is fyuA [H]
Identifier: 220904611
GI number: 220904611
Start: 1611202
End: 1613469
Strand: Reverse
Name: fyuA [H]
Synonym: Ddes_1343
Alternate gene names: 220904611
Gene position: 1613469-1611202 (Counterclockwise)
Preceding gene: 220904612
Following gene: 220904610
Centisome position: 56.15
GC content: 51.06
Gene sequence:
>2268_bases ATGGTAGGTAGAGCAAGGATTGTTTCTGTGGTTGGTCTGTGTTCAATGCTGCTTTCGGCATTGGCCATGCCGGTATTCGC TGCTGAAGGCGTGGAGCCAAAGTCTGAAGAAGGAATCACTCTTGATGTCGTGCGGGTTACTGCCCAGAAAAGGGCAGAAA CACTGAATGCCGTGCCAATGAGCCTTGAGGTCACAACAGCTGATGATCTGAAGGCCTCGCATATTACAAAGGTTGAAGAT GTGCTGGCGGCAACGCCCAATGCCATGTTTTCATCGGGTTCTGTGGCGGGGGCCATGTCGCCGTATTTCAGTATCCGTGG TGTGGGTTCTGCAGAAATTGAAACAGATCCCTCCGTGGGCGTGTTTGTAGACGGTGTTCCGCTTACGCTTATCCACGGCT ATTTGAACAATCTGCTGGACGTGGAACGGGTTGAAGTGTTGCGTGGTCCGCAGGGCACCCTGTATGGCCGCAACACTCTT GGCGGCGCTGTTAATGTCACTTCCAAGAAAGCTGATCCCAGCAAACAGGAAGGGCGCATAACCGTTGGCGCGGGCAACAA GGAGCATTTTCGTACTGAGGTTATGGCCAACACTCCTCTTTGGGACGGCAAGGCCGCTGTGCGCGCTGCCTTTGGTTACG ACCAGTACGGTCACGTGTGGGATAACGATCGGGGCGGTAATGTAGGCAAGCAAAACAATTATCAGGGACGCCTGAGCTGG TTCATGATGCTTGGCGAAAATACTACCGCCGATTTCAGCGCCGATCTGCAGAAGCAATACCGCAAGGATGGCGCGGTCAT GACCTTGGCCGACTACGAAAACGGCGACCGTTCGTACAATATTGCAGACCCGCTTGGCGGGAGCATCACCTCCGGCGGCG CCAGGCTTGAAATCAATCATGACTTTGACAGCGGTTACAAGCTGACCTCTCTCACCGGTTACCGCAGCACGGCAATGGAC TATGACGGAAGCTATGCGCCGGTGGGCTTTTTCAATGTTACAAATGCCCGCTTCAATGCTTTTGGTTTTGAGAATTTTCA GTTCCGCGACCACGGTAACTTTGTTGAAAGCTTTGGGCAGATATCTCAGGAGCTTCGGTTGACTTCTCCTGAAGATCAGG ACTTCAAGTATGTGGCAGGCGTTTATGCTGATTATAACAGGATGGATCGCAGAAACGGCCTGACAAATACGTGGGATCAA GGCTCACCATTCTTCCCCTGGTCTGCGAAAAGCGACCATGCCACTCTGGATCTGCGAGGGCAGCAAAATGCCTGGTCTGT AGCAGCATTTGGCAACGCATCCTACGACTTTAACGAATACTGGCAGATTTTTGGCGGCCTTCGCATCGGGTATGACAAGA AATCGTATGAATTTGACGCTTCTTCCAACCTTGGTGAGGATTATATCAGGGATTTCTGGGAGTCACCCGGCCTGACCATG GTCAAGGATTATGACAGCGAATGGGATAAGGTATACCTGACGCCACGCGGTGGTCTTAAGTATAGTTTTAATGAATTCAA TAATATATACTTCAGCGTAAGCAGCGGTTACAAGTCCGGCGGTTTTTCCACTTCCTTGTTCTACAACAAGCCTGGTTTCA AGTACGATGAGGAAACTACCGTCAACTATGAACTTGGTATGAAAAATACCTTTCTTGATGGTCGTGTAACCCTGAACAGC GCTCTTTTCTACATCGACTGGAGAGACCAGCAGGTAATGTCCTATGACTCTGCTACCGGCATCACCGGTATTGTCAATGC TCCTCAAAGCCAGTCTTACGGCTTTGAAATGGATATTATGGGCAAGTTCGACAACGGAATTCATGTGGGCATCGGCGCTG GCTATGCTGATGCCACCTACGTCGACTTCAGCAATGCTCCCGGAACGTATGGCGGATCTGTAGACGCCAGCGGCAATCAG CAACAGTACCATTCAAAGTTCACGGGGCGGGCCAACGCCGGCTACGAATTTGAGTTGCCTTGGGACGATCTGGTGGCGAG CGTCGACCTGACTTTCCGTTACCGTTCAAGCTACTACTATGACATCGAAAACAAGCTTGAGCAGGAAGGTTACGGCACCT TTGACATGAACATCGGGGTGGGCAACGACTCCTATGAGGTGAACCTCTGGGGCAGAAACCTTCTGAACCAGGCGGCCACT GCATCGCAGACATATATGAACGGAATGCATGCCACGCATGACCAGAATACTGTGGTCAGTCTTATTGACCCGCTGATGTT CGGTATCAACTTCACCAAAAAATTCTAG
Upstream 100 bases:
>100_bases ATTTGTCACATCGGCTCCACAGAAAGCACAATAATTTGCCGTCATGGCATTAGCCTCAACTGGTGTCCTGTAATGCGAAA TATCAGAGGAGAATGGGGTA
Downstream 100 bases:
>100_bases CTAGATACCTCTCGAAATGTGCTCTCTGCGCGGCTTGTGCCTGTGCAGTGCGTGGAGGGCACATTTTATTGCTGTGGGGA GAACGGGATGAAGTGTGCAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MVGRARIVSVVGLCSMLLSALAMPVFAAEGVEPKSEEGITLDVVRVTAQKRAETLNAVPMSLEVTTADDLKASHITKVED VLAATPNAMFSSGSVAGAMSPYFSIRGVGSAEIETDPSVGVFVDGVPLTLIHGYLNNLLDVERVEVLRGPQGTLYGRNTL GGAVNVTSKKADPSKQEGRITVGAGNKEHFRTEVMANTPLWDGKAAVRAAFGYDQYGHVWDNDRGGNVGKQNNYQGRLSW FMMLGENTTADFSADLQKQYRKDGAVMTLADYENGDRSYNIADPLGGSITSGGARLEINHDFDSGYKLTSLTGYRSTAMD YDGSYAPVGFFNVTNARFNAFGFENFQFRDHGNFVESFGQISQELRLTSPEDQDFKYVAGVYADYNRMDRRNGLTNTWDQ GSPFFPWSAKSDHATLDLRGQQNAWSVAAFGNASYDFNEYWQIFGGLRIGYDKKSYEFDASSNLGEDYIRDFWESPGLTM VKDYDSEWDKVYLTPRGGLKYSFNEFNNIYFSVSSGYKSGGFSTSLFYNKPGFKYDEETTVNYELGMKNTFLDGRVTLNS ALFYIDWRDQQVMSYDSATGITGIVNAPQSQSYGFEMDIMGKFDNGIHVGIGAGYADATYVDFSNAPGTYGGSVDASGNQ QQYHSKFTGRANAGYEFELPWDDLVASVDLTFRYRSSYYYDIENKLEQEGYGTFDMNIGVGNDSYEVNLWGRNLLNQAAT ASQTYMNGMHATHDQNTVVSLIDPLMFGINFTKKF
Sequences:
>Translated_755_residues MVGRARIVSVVGLCSMLLSALAMPVFAAEGVEPKSEEGITLDVVRVTAQKRAETLNAVPMSLEVTTADDLKASHITKVED VLAATPNAMFSSGSVAGAMSPYFSIRGVGSAEIETDPSVGVFVDGVPLTLIHGYLNNLLDVERVEVLRGPQGTLYGRNTL GGAVNVTSKKADPSKQEGRITVGAGNKEHFRTEVMANTPLWDGKAAVRAAFGYDQYGHVWDNDRGGNVGKQNNYQGRLSW FMMLGENTTADFSADLQKQYRKDGAVMTLADYENGDRSYNIADPLGGSITSGGARLEINHDFDSGYKLTSLTGYRSTAMD YDGSYAPVGFFNVTNARFNAFGFENFQFRDHGNFVESFGQISQELRLTSPEDQDFKYVAGVYADYNRMDRRNGLTNTWDQ GSPFFPWSAKSDHATLDLRGQQNAWSVAAFGNASYDFNEYWQIFGGLRIGYDKKSYEFDASSNLGEDYIRDFWESPGLTM VKDYDSEWDKVYLTPRGGLKYSFNEFNNIYFSVSSGYKSGGFSTSLFYNKPGFKYDEETTVNYELGMKNTFLDGRVTLNS ALFYIDWRDQQVMSYDSATGITGIVNAPQSQSYGFEMDIMGKFDNGIHVGIGAGYADATYVDFSNAPGTYGGSVDASGNQ QQYHSKFTGRANAGYEFELPWDDLVASVDLTFRYRSSYYYDIENKLEQEGYGTFDMNIGVGNDSYEVNLWGRNLLNQAAT ASQTYMNGMHATHDQNTVVSLIDPLMFGINFTKKF >Mature_755_residues MVGRARIVSVVGLCSMLLSALAMPVFAAEGVEPKSEEGITLDVVRVTAQKRAETLNAVPMSLEVTTADDLKASHITKVED VLAATPNAMFSSGSVAGAMSPYFSIRGVGSAEIETDPSVGVFVDGVPLTLIHGYLNNLLDVERVEVLRGPQGTLYGRNTL GGAVNVTSKKADPSKQEGRITVGAGNKEHFRTEVMANTPLWDGKAAVRAAFGYDQYGHVWDNDRGGNVGKQNNYQGRLSW FMMLGENTTADFSADLQKQYRKDGAVMTLADYENGDRSYNIADPLGGSITSGGARLEINHDFDSGYKLTSLTGYRSTAMD YDGSYAPVGFFNVTNARFNAFGFENFQFRDHGNFVESFGQISQELRLTSPEDQDFKYVAGVYADYNRMDRRNGLTNTWDQ GSPFFPWSAKSDHATLDLRGQQNAWSVAAFGNASYDFNEYWQIFGGLRIGYDKKSYEFDASSNLGEDYIRDFWESPGLTM VKDYDSEWDKVYLTPRGGLKYSFNEFNNIYFSVSSGYKSGGFSTSLFYNKPGFKYDEETTVNYELGMKNTFLDGRVTLNS ALFYIDWRDQQVMSYDSATGITGIVNAPQSQSYGFEMDIMGKFDNGIHVGIGAGYADATYVDFSNAPGTYGGSVDASGNQ QQYHSKFTGRANAGYEFELPWDDLVASVDLTFRYRSSYYYDIENKLEQEGYGTFDMNIGVGNDSYEVNLWGRNLLNQAAT ASQTYMNGMHATHDQNTVVSLIDPLMFGINFTKKF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=214, Percent_Identity=29.9065420560748, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1790405, Length=221, Percent_Identity=26.6968325791855, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83616; Mature: 83616
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGRARIVSVVGLCSMLLSALAMPVFAAEGVEPKSEEGITLDVVRVTAQKRAETLNAVPM CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCCE SLEVTTADDLKASHITKVEDVLAATPNAMFSSGSVAGAMSPYFSIRGVGSAEIETDPSVG EEEEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE VFVDGVPLTLIHGYLNNLLDVERVEVLRGPQGTLYGRNTLGGAVNVTSKKADPSKQEGRI EEECCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEECCCCCCEEEECCCCCCCCCCCCEE TVGAGNKEHFRTEVMANTPLWDGKAAVRAAFGYDQYGHVWDNDRGGNVGKQNNYQGRLSW EEECCCHHHHEEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE FMMLGENTTADFSADLQKQYRKDGAVMTLADYENGDRSYNIADPLGGSITSGGARLEINH EEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEC DFDSGYKLTSLTGYRSTAMDYDGSYAPVGFFNVTNARFNAFGFENFQFRDHGNFVESFGQ CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEECCCCHHHHHHHH ISQELRLTSPEDQDFKYVAGVYADYNRMDRRNGLTNTWDQGSPFFPWSAKSDHATLDLRG HHHHEECCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC QQNAWSVAAFGNASYDFNEYWQIFGGLRIGYDKKSYEFDASSNLGEDYIRDFWESPGLTM CCCCEEEEEECCCCCCHHHHHHHHCCEEECCCCCCEEECCCCCCCHHHHHHHHCCCCCEE VKDYDSEWDKVYLTPRGGLKYSFNEFNNIYFSVSSGYKSGGFSTSLFYNKPGFKYDEETT EECCCCCCCEEEEECCCCCEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEE VNYELGMKNTFLDGRVTLNSALFYIDWRDQQVMSYDSATGITGIVNAPQSQSYGFEMDIM EEEEECCCEEEECCEEEEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCEEEEEE GKFDNGIHVGIGAGYADATYVDFSNAPGTYGGSVDASGNQQQYHSKFTGRANAGYEFELP ECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECC WDDLVASVDLTFRYRSSYYYDIENKLEQEGYGTFDMNIGVGNDSYEVNLWGRNLLNQAAT HHHHEEEEEEEEEECCCEEECHHHHHHHCCCCEEEEEEECCCCCEEEEECCHHHHHHHHH ASQTYMNGMHATHDQNTVVSLIDPLMFGINFTKKF HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCC >Mature Secondary Structure MVGRARIVSVVGLCSMLLSALAMPVFAAEGVEPKSEEGITLDVVRVTAQKRAETLNAVPM CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCCE SLEVTTADDLKASHITKVEDVLAATPNAMFSSGSVAGAMSPYFSIRGVGSAEIETDPSVG EEEEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE VFVDGVPLTLIHGYLNNLLDVERVEVLRGPQGTLYGRNTLGGAVNVTSKKADPSKQEGRI EEECCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEECCCCCCEEEECCCCCCCCCCCCEE TVGAGNKEHFRTEVMANTPLWDGKAAVRAAFGYDQYGHVWDNDRGGNVGKQNNYQGRLSW EEECCCHHHHEEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE FMMLGENTTADFSADLQKQYRKDGAVMTLADYENGDRSYNIADPLGGSITSGGARLEINH EEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEC DFDSGYKLTSLTGYRSTAMDYDGSYAPVGFFNVTNARFNAFGFENFQFRDHGNFVESFGQ CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEECCCCHHHHHHHH ISQELRLTSPEDQDFKYVAGVYADYNRMDRRNGLTNTWDQGSPFFPWSAKSDHATLDLRG HHHHEECCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC QQNAWSVAAFGNASYDFNEYWQIFGGLRIGYDKKSYEFDASSNLGEDYIRDFWESPGLTM CCCCEEEEEECCCCCCHHHHHHHHCCEEECCCCCCEEECCCCCCCHHHHHHHHCCCCCEE VKDYDSEWDKVYLTPRGGLKYSFNEFNNIYFSVSSGYKSGGFSTSLFYNKPGFKYDEETT EECCCCCCCEEEEECCCCCEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEE VNYELGMKNTFLDGRVTLNSALFYIDWRDQQVMSYDSATGITGIVNAPQSQSYGFEMDIM EEEEECCCEEEECCEEEEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCEEEEEE GKFDNGIHVGIGAGYADATYVDFSNAPGTYGGSVDASGNQQQYHSKFTGRANAGYEFELP ECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECC WDDLVASVDLTFRYRSSYYYDIENKLEQEGYGTFDMNIGVGNDSYEVNLWGRNLLNQAAT HHHHEEEEEEEEEECCCEEECHHHHHHHCCCCEEEEEEECCCCCEEEEECCHHHHHHHHH ASQTYMNGMHATHDQNTVVSLIDPLMFGINFTKKF HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA