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The map label for this gene is ydaL [H]

Identifier: 220904448

GI number: 220904448

Start: 1385507

End: 1386601

Strand: Direct

Name: ydaL [H]

Synonym: Ddes_1178

Alternate gene names: 220904448

Gene position: 1385507-1386601 (Clockwise)

Preceding gene: 220904447

Following gene: 220904456

Centisome position: 48.22

GC content: 52.51

Gene sequence:

>1095_bases
GTGAGCAACTCCGAATCGTTTGGCGAAAACCCTTTTCGTTCTCTTGCTGCCGGAAAATTTCCGGACAAAGATAAAAAGCG
TCAACCTGGCAACGGCTTCGCTCAGGACAGGTCGCGTCGTATCAGCCATGCCGGTCTGTCCAGAGGGCAGACCGCAACGG
CTGGTGGCAGCCTCGATACCGAAGATTGCGAGCTTTTTTTGAATGCTGTTGGTCTGGTCTGTCCTGCGGGAAAAGGTGGC
GCAAAAAGAAAGAAAAAAAACACGGAGCACTCTGGCACGTTTCTTTTTGAGGAGCACTGTTCTTTGCCATGCCAACAGTC
CACAAACAAAGGCAAAAAAAATAATTCGGTCATATGTGCTGCTGCTCGAAAAAATTCTTCTGAACCGGAAAAAAACTCGT
TGCAGGGCCGTGGGCTGGAGAGGCCGGGTATGAAAAAAAATATCGGCAAGCCCGGTCATGCCTGCAAAATTAAGGAAATT
TGCGCAGATGCGGCTGAAGAGAATGGTAATTCCAGCCGAAGCGAAGATGAAGACGCCATTTTTATGCAGGCCATGGGGCA
GGTGCAACCCCTTCAAGGCCGTGGCCGCGACATTGCCCCTGCTCCTGAGGCAGGAACTCCGCCACCGCAAGGGCAGCTTA
GCTTGCAGGACTTTATGGAGGGCAAACTGGAATTTGCCCTGTCCTTTACGGATGAATACATTGAAGGTCATGTGGTCGGG
CTTGACCAGATGATAATGAACAAGCTGCGGGCAGGTTCGCTCAGCCCGGAAGGCCACCTTGATCTGCACGGCCTTAACGC
CGTACAGGCCTTTGAAGCACTGCGAGGTTTTTTACGTGGCAGTTGGTATAAAGGATTGCGTACCGTCCTGGTCGTTCCCG
GGCGTGGACGCAATTCGCCTGACGGCATCGGCATCTTGCGCGAAAAGCTGCAACTCTGGCTGACCCAGGAACCACTCAAA
AGGGTAGTACTGGCATTTTGCACGGCGCAGCCACATGACGGCGGGCCTGGCAGCGTTTATGTACTACTGCGGAAATATCG
CAAAAAAGGACGTATTTACTGGGAACGATTGCCAGCGGATTCCGACCTGTATTAG

Upstream 100 bases:

>100_bases
GGCAGCGCCTGCGGGACAATAAGACTTTCTCCCGATCAAACTGAAAAGCCGCGGCGTGCCGCGGCTTTTTTTTCAGGCAA
TTTCTAGCAGGAGGTGAAAT

Downstream 100 bases:

>100_bases
GGCAGATAATTCTTGAACAGTCTTTGGCTAGCCCGAGGCGGTTACAATACAACGGGCTGGCCCGTACGTGATTCCCATTA
TCCAGCACGGGCCGGTATCG

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MSNSESFGENPFRSLAAGKFPDKDKKRQPGNGFAQDRSRRISHAGLSRGQTATAGGSLDTEDCELFLNAVGLVCPAGKGG
AKRKKKNTEHSGTFLFEEHCSLPCQQSTNKGKKNNSVICAAARKNSSEPEKNSLQGRGLERPGMKKNIGKPGHACKIKEI
CADAAEENGNSSRSEDEDAIFMQAMGQVQPLQGRGRDIAPAPEAGTPPPQGQLSLQDFMEGKLEFALSFTDEYIEGHVVG
LDQMIMNKLRAGSLSPEGHLDLHGLNAVQAFEALRGFLRGSWYKGLRTVLVVPGRGRNSPDGIGILREKLQLWLTQEPLK
RVVLAFCTAQPHDGGPGSVYVLLRKYRKKGRIYWERLPADSDLY

Sequences:

>Translated_364_residues
MSNSESFGENPFRSLAAGKFPDKDKKRQPGNGFAQDRSRRISHAGLSRGQTATAGGSLDTEDCELFLNAVGLVCPAGKGG
AKRKKKNTEHSGTFLFEEHCSLPCQQSTNKGKKNNSVICAAARKNSSEPEKNSLQGRGLERPGMKKNIGKPGHACKIKEI
CADAAEENGNSSRSEDEDAIFMQAMGQVQPLQGRGRDIAPAPEAGTPPPQGQLSLQDFMEGKLEFALSFTDEYIEGHVVG
LDQMIMNKLRAGSLSPEGHLDLHGLNAVQAFEALRGFLRGSWYKGLRTVLVVPGRGRNSPDGIGILREKLQLWLTQEPLK
RVVLAFCTAQPHDGGPGSVYVLLRKYRKKGRIYWERLPADSDLY
>Mature_363_residues
SNSESFGENPFRSLAAGKFPDKDKKRQPGNGFAQDRSRRISHAGLSRGQTATAGGSLDTEDCELFLNAVGLVCPAGKGGA
KRKKKNTEHSGTFLFEEHCSLPCQQSTNKGKKNNSVICAAARKNSSEPEKNSLQGRGLERPGMKKNIGKPGHACKIKEIC
ADAAEENGNSSRSEDEDAIFMQAMGQVQPLQGRGRDIAPAPEAGTPPPQGQLSLQDFMEGKLEFALSFTDEYIEGHVVGL
DQMIMNKLRAGSLSPEGHLDLHGLNAVQAFEALRGFLRGSWYKGLRTVLVVPGRGRNSPDGIGILREKLQLWLTQEPLKR
VVLAFCTAQPHDGGPGSVYVLLRKYRKKGRIYWERLPADSDLY

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=183, Percent_Identity=31.1475409836066, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 39718; Mature: 39587

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSESFGENPFRSLAAGKFPDKDKKRQPGNGFAQDRSRRISHAGLSRGQTATAGGSLDT
CCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
EDCELFLNAVGLVCPAGKGGAKRKKKNTEHSGTFLFEEHCSLPCQQSTNKGKKNNSVICA
HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEHHHCCCCCHHCCCCCCCCCCEEEE
AARKNSSEPEKNSLQGRGLERPGMKKNIGKPGHACKIKEICADAAEENGNSSRSEDEDAI
ECCCCCCCCCHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
FMQAMGQVQPLQGRGRDIAPAPEAGTPPPQGQLSLQDFMEGKLEFALSFTDEYIEGHVVG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHEEEEHHHHHHCCEEEC
LDQMIMNKLRAGSLSPEGHLDLHGLNAVQAFEALRGFLRGSWYKGLRTVLVVPGRGRNSP
HHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
DGIGILREKLQLWLTQEPLKRVVLAFCTAQPHDGGPGSVYVLLRKYRKKGRIYWERLPAD
CHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCC
SDLY
CCCC
>Mature Secondary Structure 
SNSESFGENPFRSLAAGKFPDKDKKRQPGNGFAQDRSRRISHAGLSRGQTATAGGSLDT
CCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
EDCELFLNAVGLVCPAGKGGAKRKKKNTEHSGTFLFEEHCSLPCQQSTNKGKKNNSVICA
HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEHHHCCCCCHHCCCCCCCCCCEEEE
AARKNSSEPEKNSLQGRGLERPGMKKNIGKPGHACKIKEICADAAEENGNSSRSEDEDAI
ECCCCCCCCCHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
FMQAMGQVQPLQGRGRDIAPAPEAGTPPPQGQLSLQDFMEGKLEFALSFTDEYIEGHVVG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHEEEEHHHHHHCCEEEC
LDQMIMNKLRAGSLSPEGHLDLHGLNAVQAFEALRGFLRGSWYKGLRTVLVVPGRGRNSP
HHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
DGIGILREKLQLWLTQEPLKRVVLAFCTAQPHDGGPGSVYVLLRKYRKKGRIYWERLPAD
CHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCC
SDLY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]