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The map label for this gene is yjgF [C]

Identifier: 220904404

GI number: 220904404

Start: 1334378

End: 1334758

Strand: Reverse

Name: yjgF [C]

Synonym: Ddes_1134

Alternate gene names: 220904404

Gene position: 1334758-1334378 (Counterclockwise)

Preceding gene: 220904405

Following gene: 220904403

Centisome position: 46.45

GC content: 56.43

Gene sequence:

>381_bases
ATGAATAAGGAAGTCATCAGCACAGACAAGGCTCCTGCCGCCGTTGGCCCGTACAGCCAGGCCATCAAAACAGGCAACCT
CATATTTCTTTCCGGGCAGGTCCCCATTGATCCGGCAACCGGCAAACTGGTGGAAGGCGACGCCGCGGCTCAGGCCATCC
AGTGCTGCAAGAATGTGCTGGCAATCCTTGAATCACAAGGCCTGACTACTGCGAATGTCGTGAAGACAACAGTTTTCATT
ACCGACATCAAAACCTTCGGCGCCGTCAACGAAGTGTACCAGCAGTATTTCAGCGCCCCCTGCCCCGCACGCTCCTGCGT
AGAGGTCAGCGCCCTGCCACTGGGAGCCAAGGTGGAGATCGAATCCATCGCCGCAGTATAA

Upstream 100 bases:

>100_bases
TGACAGTGCCGCTGCTTCTGGCATATGGCTGCTTTGTCGCTGTTTGCCATACGCTTTTTGTTTTCAATCTTTTACCCATG
TACCGCTGAAAGGAGCAATC

Downstream 100 bases:

>100_bases
GCTTTACGCAATTTACGGCAAAACGGTGGGAAATGCGAAACGCGCATTTCCCACCGTTTTTTGCGTGGAACATTGTCTGA
AAATTTCACCTGTTTTTCTT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNKEVISTDKAPAAVGPYSQAIKTGNLIFLSGQVPIDPATGKLVEGDAAAQAIQCCKNVLAILESQGLTTANVVKTTVFI
TDIKTFGAVNEVYQQYFSAPCPARSCVEVSALPLGAKVEIESIAAV

Sequences:

>Translated_126_residues
MNKEVISTDKAPAAVGPYSQAIKTGNLIFLSGQVPIDPATGKLVEGDAAAQAIQCCKNVLAILESQGLTTANVVKTTVFI
TDIKTFGAVNEVYQQYFSAPCPARSCVEVSALPLGAKVEIESIAAV
>Mature_126_residues
MNKEVISTDKAPAAVGPYSQAIKTGNLIFLSGQVPIDPATGKLVEGDAAAQAIQCCKNVLAILESQGLTTANVVKTTVFI
TDIKTFGAVNEVYQQYFSAPCPARSCVEVSALPLGAKVEIESIAAV

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=50, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=50.8064516129032, Blast_Score=125, Evalue=6e-31,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=45.6, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=30.1587301587302, Blast_Score=72, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50.8196721311475, Blast_Score=129, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50.8196721311475, Blast_Score=128, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50.8196721311475, Blast_Score=128, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=49.0384615384615, Blast_Score=103, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=42.8571428571429, Blast_Score=101, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=42.6229508196721, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13100; Mature: 13100

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEVISTDKAPAAVGPYSQAIKTGNLIFLSGQVPIDPATGKLVEGDAAAQAIQCCKNVL
CCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHH
AILESQGLTTANVVKTTVFITDIKTFGAVNEVYQQYFSAPCPARSCVEVSALPLGAKVEI
HHHHCCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEH
ESIAAV
HCCCCC
>Mature Secondary Structure
MNKEVISTDKAPAAVGPYSQAIKTGNLIFLSGQVPIDPATGKLVEGDAAAQAIQCCKNVL
CCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHH
AILESQGLTTANVVKTTVFITDIKTFGAVNEVYQQYFSAPCPARSCVEVSALPLGAKVEI
HHHHCCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEH
ESIAAV
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]