| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904298
Identifier: 220904298
GI number: 220904298
Start: 1198486
End: 1201254
Strand: Reverse
Name: 220904298
Synonym: Ddes_1025
Alternate gene names: NA
Gene position: 1201254-1198486 (Counterclockwise)
Preceding gene: 220904299
Following gene: 220904297
Centisome position: 41.81
GC content: 60.06
Gene sequence:
>2769_bases ATGCGTTCCCTTTTGCCCCTTTTGCCGAAGCCCAGCCGCTATGCGGGTATTGAAGACAATGCCTGCCGCAAGGATCCCAG CCGGGTGCGTCTGCGTGTAGCCCTGGCCTTTCCCGATACCTATGATGTCGGTATGTCCTATCTGGGGCAAAAAATTCTCT ACAATATCGTCAACAGCCGCCCCCAGTGGTGGGCTGAAAGGGTCATGGCCCCCGAGCGCGAAGCCGCGGAAATCCTGCGC GCTCACAACACGCCGCTGGCAACGCTGGAGTCAGACACGCCCCTGGCGCAGATGCATTGCCTGAGCTTTTCCATAACGCA CGAACTTTGCTATACCAATGTGCTTTACATGCTTGATCTTGCAGGCATTCCCCTGCGCACAGCCAACCGGCCGCAGGACC TGACGGCCTGCCCCCTGATTATTGCCGGGGGCGGAGCCTTGCTCAGCGCCGAACCTTTGACGCCCTTCATAGATATCATG GTTCTTGGTGATGGCGAAGAAAGCCTGCCCGATGTGCTGCAGCTGCTCGAAAAGGCCCTAGACGAAGACTGGCCCCGCGA ACGGATGCTCCTTGAGGCACGCCATATACCCGGCATTTATGTACCTTCGCTTTTTGCCGCCCGCCCGGAAGCCCCCTCTG CGCCCCCCGTCCCCCTGGTTGCGGACTATACCCGCCCGGTGCGTCGTATCGTGGCGGACATCAATAACACCCCTTATCCA GCCAGGCAGGTGGTCCCCGTGGGGGCCGTGCACAACAGGCTGTCGCTGGAAATCGCGCGCGGGTGTACCCGCGGCTGCCG CTTCTGCCATGCGGGCATGGTGTACCGTCCTGTTCGGGAGCGCTCACTTGCGACCATCCAGACGCTGCTGGACCAGTGCC TGAGTGAAACGGGCTTTGACGAAATTTCTTTTCTCTCTCTCAGCACCGGAGATTTTTCCGCGCTGAAAACCCTGTGCTTT GGCGTACTTGACCGCTGCGCCCGCGAACAGATCGGCCTTTCCCTGCCATCACTGCGCGTCGGCTCCATTGATGATGAAAT CATCGAACGGATGGCCGACCTGCGCCGCACCGGCTGCACCCTCGCTCCGGAGGCAGGCAGCCAGCGCCTGCGTGATGTCA TCAACAAGGGCATAACCGAAGAAGAACTGCTGCTGCACGCCCAGAAATTGCTTGAGCACGGCTGGCGGCAGGTAAAGCTC TACTTTATGATCGGCCTGCCCACAGAAACCGACGACGACCTTTCCGCCATCACCGAAACCTGCCTCAAAGTGCGCGATGC GGCCGGGCGCGGCGGCCCGCGGCTTCAGGTTACGGCAGCTCTTTCGCCCTTCGTGCCCAAGCCCTTTACGCCCTTTCAGT GGGTTCCCCAGATAAGCCAGGAGGAAATCCAGCGGCGCGTACATCTGGTACGGCACCAGTTCAAGGGACAAAAATTCCTC AAACTGCGCTGGCATGAGCCTGCCATGAGCCATCTTGAAGGCATCCTTTCCCGTGCGGACCGCCGCATGGCTGATGTTGT GGAAAAAGCCTACCGGAAAGGCTCCATCTTCACGAGCTGGGTGGAAAATTTTGATCTGGCGCCCTGGCTTGAAGCTTTGG AGGAATGTGGCCTCAGCCCTGCCCAATGCATCGCCGAGCGGGTGCCGGGCAGCCCCATGCCCTGGGACCATCTGGAAGCT GGTATTTCTGAAGAATTTCTATTGCGCGAGTGGCAGCGAGCCCTGCAGGAAAAAATTACCGCCGACTGCCGCTATGGCGC ATGCCGCCAATGCGGAGCCTGCGACACAAAGGCGGGGCCATCGCGCATGCCGCACACACCTTCCCCCGCTCCTGCCGGTT CTTGCGATGCAGCCCCGTGCGAAGGCACGTATGAAGAAAATGTCGTTGCACACCTGCCTTCCGGGCAGGATGCCGCCGCC GGGCAGACAGCCCCCCTTTCTGACGCGCATCTGCACCGCAACAGGCTTATCTTTCCGCAGCGCGACCAGCGCGCCCATCA GGCAAACCGCGATGCCGACGGGCGCCTTGTATGCCGCCCCCCGGCCAGCCGTCCGCCCAAGATAACACTTGAGCTGACAA TCAAGGCCGCCCAGTATCGTGTCTGGCACAGCAAGGCCGAAGGCAGCGCCTATCTGAGCCAGTTGGAGCTGCAGGCCGTT CTGGAGCGTGCCATGCGTCGGGCGGCATTGCCGCTTGCCTTTTCACAGGGTTTCCACCCCATGCCCCTCATGTCATTCGG CCGGGCCTTGCCTGTGGGCGTTGAAAGCCGGGCCGAATGGTTTGCCCTGACTCTGCACAAAACACTGCCTGTCGAAGAAG TGGCCGGGCGTCTGAACCCGCTGCTGCCCCCCGGCATGGAAATTCTTCGCGTTGAAAAGGTAGAAGACAAGAACCGCCGT ACGGAACAGGCCCTTGCCGAGGCTTTCAGCCTGAGCCTGCCCACCCCCGAAGAAAACCGCCTTGCGGCTCAATGTTTTGC CGACTTTGCCGCCCTGCCCGAGGTGTTCTACACCAGAGACACAAAAAAAGGCCCACGCACGGCCGACATCAGGGCCATGC TGAGCCAATGGGAAACCCGGCCCACCGAGAAGGGCACAAATGCCATTGAGACCGTGACATTTGTGGCTGACTGGGATAGT GGTTATCTGTCGCCTCTACTGTTCAGCCTGGCAGTTTTACAGCCTATGGGAACACCAGAAACCTTGCGACCCAAACTCAA ATTGATGAAAACTGCACAGTTTTTTGCCGATGCGCGAGAATACCCGTAA
Upstream 100 bases:
>100_bases TGCTGCCGTTTTTTTGTTGCGCATGCGCCAAAAGCGCCGCGCCCCCAGCGAACCCGTACAGACACATATATCTGTTGCAA AACTTTCAATGAGGAAGTCT
Downstream 100 bases:
>100_bases GCGGCCCTGCAAATGGAACTTACACTGCAGCGTTTTTTGACTTTTGATCCTGTTTTGCCCGCCACATGGGAGAAATATTA TGGCATCCTGTATACCTTTT
Product: Radical SAM domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 922; Mature: 922
Protein sequence:
>922_residues MRSLLPLLPKPSRYAGIEDNACRKDPSRVRLRVALAFPDTYDVGMSYLGQKILYNIVNSRPQWWAERVMAPEREAAEILR AHNTPLATLESDTPLAQMHCLSFSITHELCYTNVLYMLDLAGIPLRTANRPQDLTACPLIIAGGGALLSAEPLTPFIDIM VLGDGEESLPDVLQLLEKALDEDWPRERMLLEARHIPGIYVPSLFAARPEAPSAPPVPLVADYTRPVRRIVADINNTPYP ARQVVPVGAVHNRLSLEIARGCTRGCRFCHAGMVYRPVRERSLATIQTLLDQCLSETGFDEISFLSLSTGDFSALKTLCF GVLDRCAREQIGLSLPSLRVGSIDDEIIERMADLRRTGCTLAPEAGSQRLRDVINKGITEEELLLHAQKLLEHGWRQVKL YFMIGLPTETDDDLSAITETCLKVRDAAGRGGPRLQVTAALSPFVPKPFTPFQWVPQISQEEIQRRVHLVRHQFKGQKFL KLRWHEPAMSHLEGILSRADRRMADVVEKAYRKGSIFTSWVENFDLAPWLEALEECGLSPAQCIAERVPGSPMPWDHLEA GISEEFLLREWQRALQEKITADCRYGACRQCGACDTKAGPSRMPHTPSPAPAGSCDAAPCEGTYEENVVAHLPSGQDAAA GQTAPLSDAHLHRNRLIFPQRDQRAHQANRDADGRLVCRPPASRPPKITLELTIKAAQYRVWHSKAEGSAYLSQLELQAV LERAMRRAALPLAFSQGFHPMPLMSFGRALPVGVESRAEWFALTLHKTLPVEEVAGRLNPLLPPGMEILRVEKVEDKNRR TEQALAEAFSLSLPTPEENRLAAQCFADFAALPEVFYTRDTKKGPRTADIRAMLSQWETRPTEKGTNAIETVTFVADWDS GYLSPLLFSLAVLQPMGTPETLRPKLKLMKTAQFFADAREYP
Sequences:
>Translated_922_residues MRSLLPLLPKPSRYAGIEDNACRKDPSRVRLRVALAFPDTYDVGMSYLGQKILYNIVNSRPQWWAERVMAPEREAAEILR AHNTPLATLESDTPLAQMHCLSFSITHELCYTNVLYMLDLAGIPLRTANRPQDLTACPLIIAGGGALLSAEPLTPFIDIM VLGDGEESLPDVLQLLEKALDEDWPRERMLLEARHIPGIYVPSLFAARPEAPSAPPVPLVADYTRPVRRIVADINNTPYP ARQVVPVGAVHNRLSLEIARGCTRGCRFCHAGMVYRPVRERSLATIQTLLDQCLSETGFDEISFLSLSTGDFSALKTLCF GVLDRCAREQIGLSLPSLRVGSIDDEIIERMADLRRTGCTLAPEAGSQRLRDVINKGITEEELLLHAQKLLEHGWRQVKL YFMIGLPTETDDDLSAITETCLKVRDAAGRGGPRLQVTAALSPFVPKPFTPFQWVPQISQEEIQRRVHLVRHQFKGQKFL KLRWHEPAMSHLEGILSRADRRMADVVEKAYRKGSIFTSWVENFDLAPWLEALEECGLSPAQCIAERVPGSPMPWDHLEA GISEEFLLREWQRALQEKITADCRYGACRQCGACDTKAGPSRMPHTPSPAPAGSCDAAPCEGTYEENVVAHLPSGQDAAA GQTAPLSDAHLHRNRLIFPQRDQRAHQANRDADGRLVCRPPASRPPKITLELTIKAAQYRVWHSKAEGSAYLSQLELQAV LERAMRRAALPLAFSQGFHPMPLMSFGRALPVGVESRAEWFALTLHKTLPVEEVAGRLNPLLPPGMEILRVEKVEDKNRR TEQALAEAFSLSLPTPEENRLAAQCFADFAALPEVFYTRDTKKGPRTADIRAMLSQWETRPTEKGTNAIETVTFVADWDS GYLSPLLFSLAVLQPMGTPETLRPKLKLMKTAQFFADAREYP >Mature_922_residues MRSLLPLLPKPSRYAGIEDNACRKDPSRVRLRVALAFPDTYDVGMSYLGQKILYNIVNSRPQWWAERVMAPEREAAEILR AHNTPLATLESDTPLAQMHCLSFSITHELCYTNVLYMLDLAGIPLRTANRPQDLTACPLIIAGGGALLSAEPLTPFIDIM VLGDGEESLPDVLQLLEKALDEDWPRERMLLEARHIPGIYVPSLFAARPEAPSAPPVPLVADYTRPVRRIVADINNTPYP ARQVVPVGAVHNRLSLEIARGCTRGCRFCHAGMVYRPVRERSLATIQTLLDQCLSETGFDEISFLSLSTGDFSALKTLCF GVLDRCAREQIGLSLPSLRVGSIDDEIIERMADLRRTGCTLAPEAGSQRLRDVINKGITEEELLLHAQKLLEHGWRQVKL YFMIGLPTETDDDLSAITETCLKVRDAAGRGGPRLQVTAALSPFVPKPFTPFQWVPQISQEEIQRRVHLVRHQFKGQKFL KLRWHEPAMSHLEGILSRADRRMADVVEKAYRKGSIFTSWVENFDLAPWLEALEECGLSPAQCIAERVPGSPMPWDHLEA GISEEFLLREWQRALQEKITADCRYGACRQCGACDTKAGPSRMPHTPSPAPAGSCDAAPCEGTYEENVVAHLPSGQDAAA GQTAPLSDAHLHRNRLIFPQRDQRAHQANRDADGRLVCRPPASRPPKITLELTIKAAQYRVWHSKAEGSAYLSQLELQAV LERAMRRAALPLAFSQGFHPMPLMSFGRALPVGVESRAEWFALTLHKTLPVEEVAGRLNPLLPPGMEILRVEKVEDKNRR TEQALAEAFSLSLPTPEENRLAAQCFADFAALPEVFYTRDTKKGPRTADIRAMLSQWETRPTEKGTNAIETVTFVADWDS GYLSPLLFSLAVLQPMGTPETLRPKLKLMKTAQFFADAREYP
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 102809; Mature: 102809
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSLLPLLPKPSRYAGIEDNACRKDPSRVRLRVALAFPDTYDVGMSYLGQKILYNIVNSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC PQWWAERVMAPEREAAEILRAHNTPLATLESDTPLAQMHCLSFSITHELCYTNVLYMLDL HHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGIPLRTANRPQDLTACPLIIAGGGALLSAEPLTPFIDIMVLGDGEESLPDVLQLLEKAL CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHH DEDWPRERMLLEARHIPGIYVPSLFAARPEAPSAPPVPLVADYTRPVRRIVADINNTPYP CCCCCHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCC ARQVVPVGAVHNRLSLEIARGCTRGCRFCHAGMVYRPVRERSLATIQTLLDQCLSETGFD HHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC EISFLSLSTGDFSALKTLCFGVLDRCAREQIGLSLPSLRVGSIDDEIIERMADLRRTGCT CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC LAPEAGSQRLRDVINKGITEEELLLHAQKLLEHGWRQVKLYFMIGLPTETDDDLSAITET CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEEEEECCCCCCHHHHHHHHH CLKVRDAAGRGGPRLQVTAALSPFVPKPFTPFQWVPQISQEEIQRRVHLVRHQFKGQKFL HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEE KLRWHEPAMSHLEGILSRADRRMADVVEKAYRKGSIFTSWVENFDLAPWLEALEECGLSP EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCH AQCIAERVPGSPMPWDHLEAGISEEFLLREWQRALQEKITADCRYGACRQCGACDTKAGP HHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC SRMPHTPSPAPAGSCDAAPCEGTYEENVVAHLPSGQDAAAGQTAPLSDAHLHRNRLIFPQ CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCC RDQRAHQANRDADGRLVCRPPASRPPKITLELTIKAAQYRVWHSKAEGSAYLSQLELQAV CHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHH LERAMRRAALPLAFSQGFHPMPLMSFGRALPVGVESRAEWFALTLHKTLPVEEVAGRLNP HHHHHHHHCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHCCC LLPPGMEILRVEKVEDKNRRTEQALAEAFSLSLPTPEENRLAAQCFADFAALPEVFYTRD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TKKGPRTADIRAMLSQWETRPTEKGTNAIETVTFVADWDSGYLSPLLFSLAVLQPMGTPE CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCH TLRPKLKLMKTAQFFADAREYP HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRSLLPLLPKPSRYAGIEDNACRKDPSRVRLRVALAFPDTYDVGMSYLGQKILYNIVNSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC PQWWAERVMAPEREAAEILRAHNTPLATLESDTPLAQMHCLSFSITHELCYTNVLYMLDL HHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGIPLRTANRPQDLTACPLIIAGGGALLSAEPLTPFIDIMVLGDGEESLPDVLQLLEKAL CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHH DEDWPRERMLLEARHIPGIYVPSLFAARPEAPSAPPVPLVADYTRPVRRIVADINNTPYP CCCCCHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCC ARQVVPVGAVHNRLSLEIARGCTRGCRFCHAGMVYRPVRERSLATIQTLLDQCLSETGFD HHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC EISFLSLSTGDFSALKTLCFGVLDRCAREQIGLSLPSLRVGSIDDEIIERMADLRRTGCT CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC LAPEAGSQRLRDVINKGITEEELLLHAQKLLEHGWRQVKLYFMIGLPTETDDDLSAITET CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHEEEEEEEEECCCCCCHHHHHHHHH CLKVRDAAGRGGPRLQVTAALSPFVPKPFTPFQWVPQISQEEIQRRVHLVRHQFKGQKFL HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEE KLRWHEPAMSHLEGILSRADRRMADVVEKAYRKGSIFTSWVENFDLAPWLEALEECGLSP EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCH AQCIAERVPGSPMPWDHLEAGISEEFLLREWQRALQEKITADCRYGACRQCGACDTKAGP HHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC SRMPHTPSPAPAGSCDAAPCEGTYEENVVAHLPSGQDAAAGQTAPLSDAHLHRNRLIFPQ CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCC RDQRAHQANRDADGRLVCRPPASRPPKITLELTIKAAQYRVWHSKAEGSAYLSQLELQAV CHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHH LERAMRRAALPLAFSQGFHPMPLMSFGRALPVGVESRAEWFALTLHKTLPVEEVAGRLNP HHHHHHHHCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHCCC LLPPGMEILRVEKVEDKNRRTEQALAEAFSLSLPTPEENRLAAQCFADFAALPEVFYTRD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TKKGPRTADIRAMLSQWETRPTEKGTNAIETVTFVADWDSGYLSPLLFSLAVLQPMGTPE CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCH TLRPKLKLMKTAQFFADAREYP HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]