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The map label for this gene is yebA [C]

Identifier: 220904279

GI number: 220904279

Start: 1174283

End: 1175095

Strand: Reverse

Name: yebA [C]

Synonym: Ddes_1006

Alternate gene names: 220904279

Gene position: 1175095-1174283 (Counterclockwise)

Preceding gene: 220904284

Following gene: 220904276

Centisome position: 40.9

GC content: 64.82

Gene sequence:

>813_bases
ATGCGCAACGCCATACTCCTGTTGAATCTGCTCCTTGTAACGGCAGCCTGGGGCCGACTGCCCGCTTTTGCGGATGAACC
AGGCCATCTTTCCAGCCCGGCGCGCGACCAGGCGCACAGCGCCCATGCGCTGCCGTCAGACAAAAGCGGACCGCCACCGG
CAGCCGCCCAGCAAGATGACGCGGCTGCAAAAACAGAGTCCGTCGCAGAATCCCTGCCCGCTGCATTGCAGGTTCGCCAG
CTGCCGCCGCTTGAAGAAATGGTAACATCGCCCTTTGGCCCGCGCCGCATGCCCACCTGGCTGAGCCGCCGGGGCATGGT
GGTGCGCGAGCACAACGGCGTTGACCTGCGTGCCCGCCTGGGCTGGCCTGTGGTGGCCTACAAAGGCGGCGAAGTCATCC
GTTCCGGCGAAGACGGCCTTTCAGGCATCGTTGTGGATATCCGGCAGGATGACGGCATGACCGCCCGCTATGCCCACCTT
GAAAAAACGCTGGCGCGCAAGGGGCAAAAAGTTCAGCGCGGCGAAAAAATAGGTATTGTGGGCTGTACGGGGCGCACCAC
GGGGGCGCACCTGCACTTCGGCCTGCGTGATGCCGGGGGCAACCTGGTGGACCCCCTGCCCTTCCTGTCCAGGGCTGAAG
ACGTTCTGCGACCGGACCCCGACGCCATTCCGGAGGAGCTTGCGCCGCAAAGCTGCGGCCCCGTGATGCGGGGACGCAAT
GGCCGCCCGGTACGCCCGGGCCGCAGCCTGAAAGAACTGGAAAACTACAGCCCGCCGCCCATCCCGGGATGGGGAGAAAA
TTCTCCGAAATAA

Upstream 100 bases:

>100_bases
AGAAAACAGCGCAGGAAGCAACAGCACAGCTCGGAGCATGCCCTTCCGGGCGACAAACAGACATTTTACCGGCGTAACAC
GCCGCTTAACGACGTCATAC

Downstream 100 bases:

>100_bases
CGTCCCGCAAAACGTGCAGGAGCACAAGAACAGATGCAACTGAAATGGCCGAACAGCCCCCGGCTGTACGCAAGCATGCC
AAGGACCCATGGTCGACAGA

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRNAILLLNLLLVTAAWGRLPAFADEPGHLSSPARDQAHSAHALPSDKSGPPPAAAQQDDAAAKTESVAESLPAALQVRQ
LPPLEEMVTSPFGPRRMPTWLSRRGMVVREHNGVDLRARLGWPVVAYKGGEVIRSGEDGLSGIVVDIRQDDGMTARYAHL
EKTLARKGQKVQRGEKIGIVGCTGRTTGAHLHFGLRDAGGNLVDPLPFLSRAEDVLRPDPDAIPEELAPQSCGPVMRGRN
GRPVRPGRSLKELENYSPPPIPGWGENSPK

Sequences:

>Translated_270_residues
MRNAILLLNLLLVTAAWGRLPAFADEPGHLSSPARDQAHSAHALPSDKSGPPPAAAQQDDAAAKTESVAESLPAALQVRQ
LPPLEEMVTSPFGPRRMPTWLSRRGMVVREHNGVDLRARLGWPVVAYKGGEVIRSGEDGLSGIVVDIRQDDGMTARYAHL
EKTLARKGQKVQRGEKIGIVGCTGRTTGAHLHFGLRDAGGNLVDPLPFLSRAEDVLRPDPDAIPEELAPQSCGPVMRGRN
GRPVRPGRSLKELENYSPPPIPGWGENSPK
>Mature_270_residues
MRNAILLLNLLLVTAAWGRLPAFADEPGHLSSPARDQAHSAHALPSDKSGPPPAAAQQDDAAAKTESVAESLPAALQVRQ
LPPLEEMVTSPFGPRRMPTWLSRRGMVVREHNGVDLRARLGWPVVAYKGGEVIRSGEDGLSGIVVDIRQDDGMTARYAHL
EKTLARKGQKVQRGEKIGIVGCTGRTTGAHLHFGLRDAGGNLVDPLPFLSRAEDVLRPDPDAIPEELAPQSCGPVMRGRN
GRPVRPGRSLKELENYSPPPIPGWGENSPK

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=40.1639344262295, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29065; Mature: 29065

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNAILLLNLLLVTAAWGRLPAFADEPGHLSSPARDQAHSAHALPSDKSGPPPAAAQQDD
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH
AAAKTESVAESLPAALQVRQLPPLEEMVTSPFGPRRMPTWLSRRGMVVREHNGVDLRARL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEC
GWPVVAYKGGEVIRSGEDGLSGIVVDIRQDDGMTARYAHLEKTLARKGQKVQRGEKIGIV
CCEEEEECCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHCCCEEEEE
GCTGRTTGAHLHFGLRDAGGNLVDPLPFLSRAEDVLRPDPDAIPEELAPQSCGPVMRGRN
ECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHCCCC
GRPVRPGRSLKELENYSPPPIPGWGENSPK
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRNAILLLNLLLVTAAWGRLPAFADEPGHLSSPARDQAHSAHALPSDKSGPPPAAAQQDD
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH
AAAKTESVAESLPAALQVRQLPPLEEMVTSPFGPRRMPTWLSRRGMVVREHNGVDLRARL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEC
GWPVVAYKGGEVIRSGEDGLSGIVVDIRQDDGMTARYAHLEKTLARKGQKVQRGEKIGIV
CCEEEEECCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHCCCEEEEE
GCTGRTTGAHLHFGLRDAGGNLVDPLPFLSRAEDVLRPDPDAIPEELAPQSCGPVMRGRN
ECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHCCCC
GRPVRPGRSLKELENYSPPPIPGWGENSPK
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]