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The map label for this gene is fecI [C]

Identifier: 218903588

GI number: 218903588

Start: 2350505

End: 2351374

Strand: Direct

Name: fecI [C]

Synonym: BCAH820_2472

Alternate gene names: 218903588

Gene position: 2350505-2351374 (Clockwise)

Preceding gene: 218903587

Following gene: 218903590

Centisome position: 44.33

GC content: 34.71

Gene sequence:

>870_bases
ATGGAAACGGAGCAATTATATGAAGTGTATCAACCATTACTATTTTCGTTAGCATATAGAATCCTTGGGAGTGTTATGGA
TGCTGAGGATATCGTTCAGGATGTATTTATCTCATTAAATAATATAGAAGATTTTCAGTCTATAGAAAATATGAAAGCGT
ATTTGTGTAAGATGGCGACAAATCGTTCAATTGATAAATTACGTTCGGCAGCGTATAAACGTAACGTGTACGTAGGGATG
TGGTTGCCAGAGCCACTAGTAGAAGAAAGTGATGAGCCATCAGAGTCATTTGCAATGAAAGAATCTCTTTCCACCGCATA
TTTATTACTTTTACAACAATTGTCTGAGGTAGAAAGAATTGTTTTCATATTAAGAGAGGTTTTCAGTTATGAATACGAAG
AAATAGCTTCGATTGTTGATAAGAGTAGTGTGAACTGTAGAAAGATTTTTCAACGGGCACGAAAAAGTATATTGGATAAG
CCGAAGCAATCGACATTAAGTACGAAGAAAATGGCTGCTTACGTTGAAAAGTTTGTATCATCATTACAGTGTGGGGATGC
GCAAGGTATGTTAGAAGTATTAAAAACAGATGCTATACTCAAAGCTGATGGTGGTGGTAAAGTTACGACTGCAATTCATC
CGATTTATTCTGCGGATCGAATTATACGTTTGTTCTTTGGGGTTGCGCAACGATTGACAGAAGCGTACACTGTTGATTTC
AAAATGGTAAATGGTATGCCAGGAGTTATAGTTACAATAAATAATAAAATAACATATGTTCTTTCGTTCGCATTTGAGGA
TGAGAAGATTTCAAACATTTATATGGTAGTTAATCCTGAAAAACTTATGCATTTAAATGTAAAAATATAA

Upstream 100 bases:

>100_bases
TGGGCTGGGCATGATGAAATATTAGCTGATGCTGCAGTAGCAAGCGGGAAACGTGCAGCGTTACACATTTTAAAGCAATT
AGAAAGTGAGGCAGTTCATC

Downstream 100 bases:

>100_bases
AAAACGCATTTCTTCAGAAATGCGTTTTTTGTTTTTTTATTATTTTTCTAACATTTCAAGAGGGACATCTTTTTCGCCAG
CTACCTCAAATTTAATTTCC

Product: RNA polymerase sigma factor SigJ

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase ECF-Type Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
METEQLYEVYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDFQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESDEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGVAQRLTEAYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI

Sequences:

>Translated_289_residues
METEQLYEVYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDFQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESDEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGVAQRLTEAYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
>Mature_289_residues
METEQLYEVYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDFQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESDEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGVAQRLTEAYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32937; Mature: 32937

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEQLYEVYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDFQSIENMKAYLCKMAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
NRSIDKLRSAAYKRNVYVGMWLPEPLVEESDEPSESFAMKESLSTAYLLLLQQLSEVERI
CCCHHHHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDKPKQSTLSTKKMAAYVEKFVS
HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLQCGDAQGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGVAQRLTEAYTVDF
HHCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEE
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
EEECCCCCEEEEECCCEEEEEEEEECCCCCCEEEEEECCHHEEEEEECC
>Mature Secondary Structure
METEQLYEVYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDFQSIENMKAYLCKMAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
NRSIDKLRSAAYKRNVYVGMWLPEPLVEESDEPSESFAMKESLSTAYLLLLQQLSEVERI
CCCHHHHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDKPKQSTLSTKKMAAYVEKFVS
HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLQCGDAQGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGVAQRLTEAYTVDF
HHCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEE
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
EEECCCCCEEEEECCCEEEEEEEEECCCCCCEEEEEECCHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA