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The map label for this gene is 218902920

Identifier: 218902920

GI number: 218902920

Start: 1700795

End: 1701361

Strand: Direct

Name: 218902920

Synonym: BCAH820_1803

Alternate gene names: NA

Gene position: 1700795-1701361 (Clockwise)

Preceding gene: 218902917

Following gene: 218902921

Centisome position: 32.07

GC content: 32.45

Gene sequence:

>567_bases
ATGAAATCAAATGAGAAAAATTATATAAAAAGATTAAAGCGGCAAAAAGAAGATGCGCTAGAATTTGTTGTTGATACATA
CTTACCACTCATAAAAGGAATCACGCACAAAGTTCTTCTTCCTGTTCAAAATGATGGGTTAATAGAGGAATGTGTAAACG
ATATATTTCTTTCCATATGGAATAACGCAAATAAATTTCATGGAGAACCAAATGATTTTAAAAAGTGGATTGCGGCAATT
GCGAAGTTTAAAGCGATTGATTATTACCGGAAAGCGACTAAAAAAGTTGAAATTATTTCGGATGAGTTTCATATTAGTAC
AGAAAAGTCGGCAGAAGACGAATTAATTATTATGGAAGATAGAGAAGAATTATTAATGCTTATTAATCAATTAGAACCGC
TAGATCAAAAAGTGTTCATTATGAAATATTTACTCGGTATGAAGACAGAAGAAATAGGTGACAAGTTAGGATTAACCCGG
GCAGCTATCGATAATCGTGTGTACCGGGGAAAAAAGAAGCTACAACAAAATGCTACGAATATTAGTTTTGGAGGTAGTGT
AATATGA

Upstream 100 bases:

>100_bases
CCATTACATACAAAAAATAATAAAAAGATGAGAGGAAATATTTTTTTAGACGTTATATAGGGTGTAAAAGCTTTTACAAA
AAAATAAGGGGAATCGCTAC

Downstream 100 bases:

>100_bases
AAGACATTTATGAACTATTAAATGATATTGATATAGATGAGAAAGAACTTGAGGAAATTGAGGCTTCTGAAATTGAAAAA
GAAAAAGTGAAGCGTAATGT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSVI

Sequences:

>Translated_188_residues
MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSVI
>Mature_188_residues
MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSVI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21780; Mature: 21780

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH
NNANKFHGEPNDFKKWIAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCEEEECC
REELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISFGGSVI
CCCCCCCC
>Mature Secondary Structure
MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH
NNANKFHGEPNDFKKWIAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCEEEECC
REELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISFGGSVI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA