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The map label for this gene is fni [H]

Identifier: 218902710

GI number: 218902710

Start: 1505589

End: 1506638

Strand: Direct

Name: fni [H]

Synonym: BCAH820_1593

Alternate gene names: 218902710

Gene position: 1505589-1506638 (Clockwise)

Preceding gene: 218902709

Following gene: 218902712

Centisome position: 28.39

GC content: 38.86

Gene sequence:

>1050_bases
GTGGTAAGGGCAAAACGTAAATTAGATCATATTGAATACGCTCTTTCTACTGGTCAGTCTCGTACGCATGGCTTTCATGA
TATTGAATTTGTGCATCAAAGCTTGCCAAATTCAAGTTATGAAACAATAACATGTGAAACAAAAATCGGCGAACTTTCAC
TAAGTTCGCCGATTTTTATCAATGCGATGACTGGTGGTGGAGGAGAGAAAACGTTACATATTAATGAGCAATTAGCATAT
GTAGCGAAACATCATAACCTTGCTATGGCTGTAGGTTCGCAAATGGCGGCGTTAAAAGATGAAAGTGAAGCTGCTTCTTA
TAAGATTATTAGAAAGGTAAATCCAAATGGTATTTTCTTTGCTAATTTAGGTAGTGAGGCAACTGTTGAACAGGCAGAGC
GTGCTGTTGATATGGTTGGAGCGAATGCGCTACAAATTCATTTAAATGTCATACAGGAGTTAACGATGCCAGAAGGAGAC
CGTGACTTTACTGGTGTACTTCAGCGTATTGAGAAAATTGTTTTAAATAGTAAAGTTCCTGTCATTGTAAAAGAAGTTGG
ATTTGGGATGAGTAAGGAAACAATGCAACAGTTAGCGAGCGTAGGTGTAACGGCAATTGATATTGGCGGACAAGGTGGTA
CGAATTTTGCTGCTGTTGAAAATGAAAGAAGACAGCGAATGCTTTCTTATTTTAATAACTGGGGCATACAAACAGCTACC
TCGATTATTGAAGCAACCTCTACAAATAATAATCTCTCTTTTATTGCATCTGGGGGTATACAAACAGCGCTTGACGTAGC
GAAAGCAATCGCATTAGGGGCGAATACAACTGCGTTTGCTGGATACTTTTTACGCATTTTAATGGAAGATGGTATCGAGA
AGTTGGTGGACGAAATTGACCTTTTACATACAGATTTGAAATTTATTATGACAGCTCTCGGTGCAAAGACGATAGAAGAG
TTACAGTCCGTACCTCTTGTTATAAAGGGTGAAACGTATCATTGGTTAACGCAGCGTGGAATTGATACGACGCATTATAG
TAGAAGATAA

Upstream 100 bases:

>100_bases
TTACAGTCAGTATGAACCAAATGCTGATTCTGCTACTTTCCAATTAAGTGATATTATTGGTGAACAACTGAAAAAATTAA
AGAAATAAAGAGGGGTACAA

Downstream 100 bases:

>100_bases
AAAATCAACCGATTGGTTGGTTTTTTTGTATTCTATTCGTTTTAGTAATATAAGGTTAGGGATGGAGTTGATAGTCTATA
AATATTTTATAATATGTATA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR

Sequences:

>Translated_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR
>Mature_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38186; Mature: 38186

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHEEEEEEECCCEEEE
ANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGDRDFTGVLQRIEKIVLNSKVP
EECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
VIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEID
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVIKGETYHWLTQRGIDTTHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEHHHCCCCCCCCCCC
>Mature Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHEEEEEEECCCEEEE
ANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGDRDFTGVLQRIEKIVLNSKVP
EECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
VIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEID
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVIKGETYHWLTQRGIDTTHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA