Click here to switch to the map view.

The map label for this gene is liaH [H]

Identifier: 218902645

GI number: 218902645

Start: 1444569

End: 1445231

Strand: Direct

Name: liaH [H]

Synonym: BCAH820_1528

Alternate gene names: 218902645

Gene position: 1444569-1445231 (Clockwise)

Preceding gene: 218902644

Following gene: 218902646

Centisome position: 27.24

GC content: 34.54

Gene sequence:

>663_bases
ATGAAACAATCTTTATTCGGACGTGTACGCGATGCAATTTTAGCAGATTTTCATAATGTATTAGATGAGAAAGAAAGAAA
AAACCCAATTGCTATGTTAAACCAATATTTACGCGATAGTGAGCGTGAAATAACAAAAATTGAGAAGTTAATTCAGCGTC
ATAAAACATTAAAATCGAACTTTGCTCGTGAACTTGAGCAAGCTCGTTATTTCGTAAATAAAAGATCAAAGCAAGCGCTT
ATCGCTCAAGAAGCAGGCGAATTACAACTACATGAGCGTGCATTAGAAGAAGTAGCTTACTATGAAGGGCAAGTAACTCG
ATTAGAAGAAATGTATGCAGGTGTTGTAGAGCAAATTGATGAGTTAGAGCGTCGTCTTTCTGAAATGAAAAATAAATTAA
AAGAAATGCACGCAAAACGTATGGAATTAATGGCACGTGAAAATATGGCACATGCAAATCGTCGTATGAATACTGCGATG
CATAAAATGGATGAAAATAATCCATTCTTACGCTTTGAAGAAATTGAAGAGCATATTCGTGACTTAGAAACTCGTATGAA
TGATGAGCATGAACGTGACACATTTGATATGAAAATTGCAAAACTTGAGCGTGAAATGAAAGAAAAGAACGATGTATCGT
TAACGAAAGAGTTAACAAAATAA

Upstream 100 bases:

>100_bases
AACCATATAGCAACTTTGAAGATGAGTGGAACAAGTTAATGAAAAACTAATAAAAAATAAATCAAATTAAATTTATAAAG
TAGAAGAGAGGAAGATTATA

Downstream 100 bases:

>100_bases
TAGTAGTATATTATAAAACAGGCTTATGATATAGTGATAGGAGAAAAGGTGTTGGAAAGCAATGCCTTTTCTTCTATGTA
TATGTGACAAGAAGGGGGGA

Product: PspA/IM30 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKQSLFGRVRDAILADFHNVLDEKERKNPIAMLNQYLRDSEREITKIEKLIQRHKTLKSNFARELEQARYFVNKRSKQAL
IAQEAGELQLHERALEEVAYYEGQVTRLEEMYAGVVEQIDELERRLSEMKNKLKEMHAKRMELMARENMAHANRRMNTAM
HKMDENNPFLRFEEIEEHIRDLETRMNDEHERDTFDMKIAKLEREMKEKNDVSLTKELTK

Sequences:

>Translated_220_residues
MKQSLFGRVRDAILADFHNVLDEKERKNPIAMLNQYLRDSEREITKIEKLIQRHKTLKSNFARELEQARYFVNKRSKQAL
IAQEAGELQLHERALEEVAYYEGQVTRLEEMYAGVVEQIDELERRLSEMKNKLKEMHAKRMELMARENMAHANRRMNTAM
HKMDENNPFLRFEEIEEHIRDLETRMNDEHERDTFDMKIAKLEREMKEKNDVSLTKELTK
>Mature_220_residues
MKQSLFGRVRDAILADFHNVLDEKERKNPIAMLNQYLRDSEREITKIEKLIQRHKTLKSNFARELEQARYFVNKRSKQAL
IAQEAGELQLHERALEEVAYYEGQVTRLEEMYAGVVEQIDELERRLSEMKNKLKEMHAKRMELMARENMAHANRRMNTAM
HKMDENNPFLRFEEIEEHIRDLETRMNDEHERDTFDMKIAKLEREMKEKNDVSLTKELTK

Specific function: Unknown

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 26467; Mature: 26467

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSLFGRVRDAILADFHNVLDEKERKNPIAMLNQYLRDSEREITKIEKLIQRHKTLKSN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARELEQARYFVNKRSKQALIAQEAGELQLHERALEEVAYYEGQVTRLEEMYAGVVEQID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELERRLSEMKNKLKEMHAKRMELMARENMAHANRRMNTAMHKMDENNPFLRFEEIEEHIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
DLETRMNDEHERDTFDMKIAKLEREMKEKNDVSLTKELTK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQSLFGRVRDAILADFHNVLDEKERKNPIAMLNQYLRDSEREITKIEKLIQRHKTLKSN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARELEQARYFVNKRSKQALIAQEAGELQLHERALEEVAYYEGQVTRLEEMYAGVVEQID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELERRLSEMKNKLKEMHAKRMELMARENMAHANRRMNTAMHKMDENNPFLRFEEIEEHIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
DLETRMNDEHERDTFDMKIAKLEREMKEKNDVSLTKELTK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]