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The map label for this gene is ocd2 [H]

Identifier: 218902108

GI number: 218902108

Start: 957468

End: 958445

Strand: Direct

Name: ocd2 [H]

Synonym: BCAH820_0990

Alternate gene names: 218902108

Gene position: 957468-958445 (Clockwise)

Preceding gene: 218902107

Following gene: 218902109

Centisome position: 18.06

GC content: 42.02

Gene sequence:

>978_bases
ATGCTAGTCATAAGCGCGAACGAACAAAGAAACTTAGTAAATATGAACGAAGTCATTACATACGCGGCGCTTGCTTTACA
AGAGTTTTCCGCAGAAAGAACGATCACACCAATACGTACTTCACTGCCATTTGCGAATGAGAAAAATACTGCATTAATTA
TGCCTTCCGTAGCGGAGGGACTTGAAGTACTTGGCTTAAAAGTAGTAACAGTAGTCCCGCATAACAAAAAGATAGGAAAG
AAAACGATAAACGGGATTGTGATGCTATCCGACTTTCAAACGGGAGAACCGCTCGCACTTTTAGAAGGATCGTACTTAAC
GATGATTCGAACAGGCGCCTTATCGGGAGTAGCAACAAAATATTTAGCTCGTCATAACGCAAAAACTTTATGTATTATCG
GGACAGGAGAACAAGCGAAAGGGATTGCCGAAGCAGTATTTGCGGTTAGAGATATTGAAAGAGTCATGTTATACAACCGA
ACAGAAGAAAAAGCATATGCATTCTCGCAATATATACAAAAGAGATTCAATACACCTACTTATGTTCACAAAAACGCAAA
TAAAGCAATAAGCGAAGCAGACATCATCGTTACAACTACGAACGCATCCACACCAGTCTTCTCAGAAAAACTACAAAAGG
GCGTCCACATAAACGCCGTCGGCTCATTTAGGCCGAACATGCAAGAATTACCATCTCACGCCATCGCTAATGCAAATAAA
GTAGTAGTCGAATCAAAAGAGGCAGCACTAGAAGAAACAGGTGATCTTCAAGTTCCAGTGCGAGAAGGTCTATTTGAGGC
AAGCGACATCCATGCCGAACTTGGACAAATTATAAGCGGGGAAAAAGCAGGCCGCGAAAGTGATGAAGAGATTACTGTTT
TTAAATCGGTTGGTTTGGCAGTAGTGGATATTATCGTTGCGAAGTATTTGTATGAGAGAGCGGTGGAGCGCGGGGTTGGG
AGTAGGATTGAGTTTTGA

Upstream 100 bases:

>100_bases
GGGAATGCATTTATTACAGGATTTCATCAGTTCGTTGTAGACCCGCGAGATGATTTGAATCGGGGATTTTTGTTAGGATA
GAAGGAGGAGGTGGAAAGAT

Downstream 100 bases:

>100_bases
GGGAGACTGCCTTTTGGTGGTCTTTTTTTGCATAAAATCTTGTAAAGCAAGAAAAAGTAGAGCATCTATATGAATTCAAT
TACATATCCAGTAATAACTA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLVISANEQRNLVNMNEVITYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANKAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYERAVERGVG
SRIEF

Sequences:

>Translated_325_residues
MLVISANEQRNLVNMNEVITYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANKAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYERAVERGVG
SRIEF
>Mature_325_residues
MLVISANEQRNLVNMNEVITYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANKAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYERAVERGVG
SRIEF

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=288, Percent_Identity=34.0277777777778, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI4503065, Length=288, Percent_Identity=34.0277777777778, Blast_Score=149, Evalue=3e-36,
Organism=Drosophila melanogaster, GI24642678, Length=306, Percent_Identity=31.0457516339869, Blast_Score=95, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35493; Mature: 35493

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVISANEQRNLVNMNEVITYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEG
CEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEEECCCHHHH
LEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATK
HHHHCEEEEEEECCCCHHCHHHHCCEEEEECCCCCCCEEEECCCEEEEEECCCHHHHHHH
YLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNRTEEKAYAFSQYIQKRFNTPT
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YVHKNANKAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
EEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCCHHHCCHHHHCCCCE
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLA
EEEECHHHHHHHCCCEEECHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH
VVDIIVAKYLYERAVERGVGSRIEF
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVISANEQRNLVNMNEVITYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEG
CEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEEECCCHHHH
LEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATK
HHHHCEEEEEEECCCCHHCHHHHCCEEEEECCCCCCCEEEECCCEEEEEECCCHHHHHHH
YLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNRTEEKAYAFSQYIQKRFNTPT
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YVHKNANKAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
EEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCCHHHCCHHHHCCCCE
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLA
EEEECHHHHHHHCCCEEECHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH
VVDIIVAKYLYERAVERGVGSRIEF
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]