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The map label for this gene is yfjK [C]

Identifier: 218901977

GI number: 218901977

Start: 820544

End: 823135

Strand: Direct

Name: yfjK [C]

Synonym: BCAH820_0859

Alternate gene names: 218901977

Gene position: 820544-823135 (Clockwise)

Preceding gene: 218901976

Following gene: 218901978

Centisome position: 15.47

GC content: 32.18

Gene sequence:

>2592_bases
ATGTCTAAAAAAAGGTTAGTTCATAAATTATATAATTTAGATGGATTTCAAGAAAGTCTTTTGCCTGTGGTAGTGCAATC
TGTTACATTACAATTTATAAATATCAATACGGAAAATAATGAGTTTATGAAAAAGGTAATTGACTGGGAATATATGCTTT
TATGTGGGAGTATTCTTGCTAAATCAGATAATGGTGAACATTTAGATGTAGCTTATAGAATTGCTCAATATTGTTTAAAT
TCTTTGGAGACAAACGAGCATCAAAAATTAGCTGCAACAATCATTTTAGATTCTATGACAAATGCTTCAACTATCCAGTT
AGCTATGGAGAAAGAATTAATACCTGCTACTTACAAAGAGAATGTACCATTAACTTTTCAACTAGAGATGATTAAGAGGG
GGATACAATACTCTGTACTTGATCAAGGAACAAATAATTTATTATATGTTAATCGATTTCAATTGGATGCCTATAAAGGA
GCTATGGAAAATGATTGGACAAGTATTTCCGCCCCCACCTCTGCAGGTAAGTCATTTATAATTTTACAAATGCTAATTCA
GTATTTAAAAAAGCAAAACAATCAAGTAATAGTATATATTGTGCCGACAAGAGCTTTAATACAACAAGTGGAATACGATT
TACATAAAGCTTTATCTGTAAATAAATTAGGAAAGGTTTATGTTACTTCAGTTCCAATCTTTCCAAAAGATATGGAAAAT
GAAAGTGTAGTCTTTGTATTAACTCAAGAAAGGCTACAATGGATGCTGTTGGATAATCATGAGATAAAGCCTAGCATGAT
TATTGTAGATGAGGCACAAAAGATTGGAGACGGTTCTAGGGGTATATTATTACAACAGGTTATAGAAGAAATTATTCGTC
GAACTAGTGAAGCGAAATTTATTTTTTCTAGTCCGATGACATCTAATCCAGAAATATTTTTAAATAAAGCAACGAGCGGT
TCTTTAACAAAATCAATTGTTACTGAACAAGTTACTGTAAATCAAAATCTTCTATGGGTTTCTCAAGTTCCTAGGAAACC
CACACAATGGAACATAGAACTATGCTTAAAAGATAGTAGGATATATTTAGGAAAGTTTGCAATGAGAAATCGTCCAACTC
AAGTTAGCAAGAGGTTACCATTTATTGCTTTTGAATTAGGAAATAAGGAAGGTGGAAATTTAATTTATGCTAATGCACCT
GCGGAGGCAGAGAAATGTGCCAAAATTTTATGGGATTTACAGGGAGATGAGGCAGATACAACTGATAAAGAAATACATGA
TTTGATTAAGCTGATAAAAAAGGTAATTAATAAAGATTATGTATTAGCAGAAATATTAACAAGAGGTATAGCCTTTCATT
ATGGAAATTTGCCTTTAATTATAAAAAATGAGATAGAACGGTTATTTAAAAATGGGAAAATTAAATATTTAGTATGTACA
TCCACTCTTATTGAAGGAATGAACTTGCCTGCAAAATCTATATTTATTAGAGGACCTAAAAAAGGGATAGGTACACCAAT
GAATGAAATTGACTTTTGGAACTTAGCTGGACGAGCTGGCAGACAAGGGAAGGAATTTCAAGGTAATGTTATATGTGTAG
ATGTAACCGATTCAAAGCTTTGGAATGGAGAACCACCAAGTATCAAGAAAAAATATGTGATAGAGCCAAGTGTTGATATG
GTTGTCCAAAATATCGATCAACTTATAGACTTCATAGAGGCTGGGACACCGAGAAAAGAGGCAAGTAGTAATCCAGAATT
AGAGTATGGATTTGGTTATTTTTTGGGAGAACATATTAGAAATGATGGGCTGAATAATTCTCCTTTTTTAGACTCATACG
AGAAAGAAACCGTAAAGATTGTTGAAAAAACAATCACAGAATCTTTACAAGACATAGAGATTCCTAAAGAGATAATACTG
AAAAATTCCGCTGTCAGTCCAATTGCTCAGCAAAAATTATTACAGTTTTTCAAAGAGTGTGATGAAGAAATCGAACAATA
TGTTCCTTTGCTACCTGAGAGTGATGAGGCATTGGATCAATATTGTAGAATAGTTGAGAAGATAAGTGGATTTTTGTCGG
GAGATCCAGCAGCAATAACATATCCGCATGCATTACTAGTTGTGGAATGGATGAGAGGTTATAGTCTATCTAGGATAATT
AATCGAAACTGGAAGTATTGGAAAGAGAAAAATAAAAATCTCCAAACTGTTATCAGAGATACTATGAGGGATATCGAAGA
GTATGCAAGATTTAAATTTGTTAAATATTCTTCATGTTATATTGATATTTTAAAATATTTCTTAGAGTGTAATGGTTACG
AGGAAATAGTAAAAGATATTCCAGAGCTAAGCTTGTGGTTAGAATTTGGTGTATCTCAGGAGACTCAAATTTCTTTGATG
AGCTTAGGATTAACTAGAACATCAGCGATTGCTGTTTCAGAATACATTGTAGCTACAGATTTAACCCCTAAACAGTGTAT
AGGGTGGTTAAAAGAGCATAATTTAGAGTCACTCGATTTATCACCTATTGTAGTAATGGAAATTTATAATGTTTTAAGTG
TACATACAAAAGTTGATTTATTGAACAATTAG

Upstream 100 bases:

>100_bases
AAAAACAGAACGCCTCTAGATTCTTTTATTTTAGAAGTGTTTTTAGTTCCATTCCCATGTGTAAAAACATTTAGAGATAG
TTTCTTAGGAGAGCTTGCTA

Downstream 100 bases:

>100_bases
AGTTGGGATGGTAATGAGATATAAAAATAAATTTATTTAATGGGGGCTTAGCATAGGTGTTAAGAAGGTTCAATGACTAT
ATAATTCGAAAATTATTAAA

Product: dead/deah box helicase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 863; Mature: 862

Protein sequence:

>863_residues
MSKKRLVHKLYNLDGFQESLLPVVVQSVTLQFININTENNEFMKKVIDWEYMLLCGSILAKSDNGEHLDVAYRIAQYCLN
SLETNEHQKLAATIILDSMTNASTIQLAMEKELIPATYKENVPLTFQLEMIKRGIQYSVLDQGTNNLLYVNRFQLDAYKG
AMENDWTSISAPTSAGKSFIILQMLIQYLKKQNNQVIVYIVPTRALIQQVEYDLHKALSVNKLGKVYVTSVPIFPKDMEN
ESVVFVLTQERLQWMLLDNHEIKPSMIIVDEAQKIGDGSRGILLQQVIEEIIRRTSEAKFIFSSPMTSNPEIFLNKATSG
SLTKSIVTEQVTVNQNLLWVSQVPRKPTQWNIELCLKDSRIYLGKFAMRNRPTQVSKRLPFIAFELGNKEGGNLIYANAP
AEAEKCAKILWDLQGDEADTTDKEIHDLIKLIKKVINKDYVLAEILTRGIAFHYGNLPLIIKNEIERLFKNGKIKYLVCT
STLIEGMNLPAKSIFIRGPKKGIGTPMNEIDFWNLAGRAGRQGKEFQGNVICVDVTDSKLWNGEPPSIKKKYVIEPSVDM
VVQNIDQLIDFIEAGTPRKEASSNPELEYGFGYFLGEHIRNDGLNNSPFLDSYEKETVKIVEKTITESLQDIEIPKEIIL
KNSAVSPIAQQKLLQFFKECDEEIEQYVPLLPESDEALDQYCRIVEKISGFLSGDPAAITYPHALLVVEWMRGYSLSRII
NRNWKYWKEKNKNLQTVIRDTMRDIEEYARFKFVKYSSCYIDILKYFLECNGYEEIVKDIPELSLWLEFGVSQETQISLM
SLGLTRTSAIAVSEYIVATDLTPKQCIGWLKEHNLESLDLSPIVVMEIYNVLSVHTKVDLLNN

Sequences:

>Translated_863_residues
MSKKRLVHKLYNLDGFQESLLPVVVQSVTLQFININTENNEFMKKVIDWEYMLLCGSILAKSDNGEHLDVAYRIAQYCLN
SLETNEHQKLAATIILDSMTNASTIQLAMEKELIPATYKENVPLTFQLEMIKRGIQYSVLDQGTNNLLYVNRFQLDAYKG
AMENDWTSISAPTSAGKSFIILQMLIQYLKKQNNQVIVYIVPTRALIQQVEYDLHKALSVNKLGKVYVTSVPIFPKDMEN
ESVVFVLTQERLQWMLLDNHEIKPSMIIVDEAQKIGDGSRGILLQQVIEEIIRRTSEAKFIFSSPMTSNPEIFLNKATSG
SLTKSIVTEQVTVNQNLLWVSQVPRKPTQWNIELCLKDSRIYLGKFAMRNRPTQVSKRLPFIAFELGNKEGGNLIYANAP
AEAEKCAKILWDLQGDEADTTDKEIHDLIKLIKKVINKDYVLAEILTRGIAFHYGNLPLIIKNEIERLFKNGKIKYLVCT
STLIEGMNLPAKSIFIRGPKKGIGTPMNEIDFWNLAGRAGRQGKEFQGNVICVDVTDSKLWNGEPPSIKKKYVIEPSVDM
VVQNIDQLIDFIEAGTPRKEASSNPELEYGFGYFLGEHIRNDGLNNSPFLDSYEKETVKIVEKTITESLQDIEIPKEIIL
KNSAVSPIAQQKLLQFFKECDEEIEQYVPLLPESDEALDQYCRIVEKISGFLSGDPAAITYPHALLVVEWMRGYSLSRII
NRNWKYWKEKNKNLQTVIRDTMRDIEEYARFKFVKYSSCYIDILKYFLECNGYEEIVKDIPELSLWLEFGVSQETQISLM
SLGLTRTSAIAVSEYIVATDLTPKQCIGWLKEHNLESLDLSPIVVMEIYNVLSVHTKVDLLNN
>Mature_862_residues
SKKRLVHKLYNLDGFQESLLPVVVQSVTLQFININTENNEFMKKVIDWEYMLLCGSILAKSDNGEHLDVAYRIAQYCLNS
LETNEHQKLAATIILDSMTNASTIQLAMEKELIPATYKENVPLTFQLEMIKRGIQYSVLDQGTNNLLYVNRFQLDAYKGA
MENDWTSISAPTSAGKSFIILQMLIQYLKKQNNQVIVYIVPTRALIQQVEYDLHKALSVNKLGKVYVTSVPIFPKDMENE
SVVFVLTQERLQWMLLDNHEIKPSMIIVDEAQKIGDGSRGILLQQVIEEIIRRTSEAKFIFSSPMTSNPEIFLNKATSGS
LTKSIVTEQVTVNQNLLWVSQVPRKPTQWNIELCLKDSRIYLGKFAMRNRPTQVSKRLPFIAFELGNKEGGNLIYANAPA
EAEKCAKILWDLQGDEADTTDKEIHDLIKLIKKVINKDYVLAEILTRGIAFHYGNLPLIIKNEIERLFKNGKIKYLVCTS
TLIEGMNLPAKSIFIRGPKKGIGTPMNEIDFWNLAGRAGRQGKEFQGNVICVDVTDSKLWNGEPPSIKKKYVIEPSVDMV
VQNIDQLIDFIEAGTPRKEASSNPELEYGFGYFLGEHIRNDGLNNSPFLDSYEKETVKIVEKTITESLQDIEIPKEIILK
NSAVSPIAQQKLLQFFKECDEEIEQYVPLLPESDEALDQYCRIVEKISGFLSGDPAAITYPHALLVVEWMRGYSLSRIIN
RNWKYWKEKNKNLQTVIRDTMRDIEEYARFKFVKYSSCYIDILKYFLECNGYEEIVKDIPELSLWLEFGVSQETQISLMS
LGLTRTSAIAVSEYIVATDLTPKQCIGWLKEHNLESLDLSPIVVMEIYNVLSVHTKVDLLNN

Specific function: Unknown

COG id: COG1204

COG function: function code R; Superfamily II helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI76880486, Length=512, Percent_Identity=23.6328125, Blast_Score=79, Evalue=2e-14,
Organism=Homo sapiens, GI139394648, Length=103, Percent_Identity=38.8349514563107, Blast_Score=73, Evalue=1e-12,
Organism=Escherichia coli, GI1788980, Length=96, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI86563272, Length=385, Percent_Identity=23.1168831168831, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI133930973, Length=156, Percent_Identity=28.8461538461538, Blast_Score=68, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI9755332, Length=441, Percent_Identity=25.3968253968254, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323430, Length=120, Percent_Identity=38.3333333333333, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17933644, Length=95, Percent_Identity=41.0526315789474, Blast_Score=76, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647182, Length=405, Percent_Identity=25.4320987654321, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17864608, Length=90, Percent_Identity=41.1111111111111, Blast_Score=70, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17933658, Length=101, Percent_Identity=35.6435643564356, Blast_Score=69, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022965 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 98542; Mature: 98411

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKRLVHKLYNLDGFQESLLPVVVQSVTLQFININTENNEFMKKVIDWEYMLLCGSILA
CCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHH
KSDNGEHLDVAYRIAQYCLNSLETNEHQKLAATIILDSMTNASTIQLAMEKELIPATYKE
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCCCEEEEEHHHCCCCCCCCC
NVPLTFQLEMIKRGIQYSVLDQGTNNLLYVNRFQLDAYKGAMENDWTSISAPTSAGKSFI
CCCEEEEHHHHHCCCCEEEECCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHH
ILQMLIQYLKKQNNQVIVYIVPTRALIQQVEYDLHKALSVNKLGKVYVTSVPIFPKDMEN
HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
ESVVFVLTQERLQWMLLDNHEIKPSMIIVDEAQKIGDGSRGILLQQVIEEIIRRTSEAKF
CCEEEEEEHHHEEEEEECCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHCCCCCEE
IFSSPMTSNPEIFLNKATSGSLTKSIVTEQVTVNQNLLWVSQVPRKPTQWNIELCLKDSR
EEECCCCCCCCEEEEECCCCCHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEEEECCE
IYLGKFAMRNRPTQVSKRLPFIAFELGNKEGGNLIYANAPAEAEKCAKILWDLQGDEADT
EEEHHHHHCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCC
TDKEIHDLIKLIKKVINKDYVLAEILTRGIAFHYGNLPLIIKNEIERLFKNGKIKYLVCT
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHCCCEEEEEEE
STLIEGMNLPAKSIFIRGPKKGIGTPMNEIDFWNLAGRAGRQGKEFQGNVICVDVTDSKL
HHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCC
WNGEPPSIKKKYVIEPSVDMVVQNIDQLIDFIEAGTPRKEASSNPELEYGFGYFLGEHIR
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHH
NDGLNNSPFLDSYEKETVKIVEKTITESLQDIEIPKEIILKNSAVSPIAQQKLLQFFKEC
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
DEEIEQYVPLLPESDEALDQYCRIVEKISGFLSGDPAAITYPHALLVVEWMRGYSLSRII
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCHHHHHH
NRNWKYWKEKNKNLQTVIRDTMRDIEEYARFKFVKYSSCYIDILKYFLECNGYEEIVKDI
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHCCCHHHHHHHC
PELSLWLEFGVSQETQISLMSLGLTRTSAIAVSEYIVATDLTPKQCIGWLKEHNLESLDL
HHHHHHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCC
SPIVVMEIYNVLSVHTKVDLLNN
CCHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
SKKRLVHKLYNLDGFQESLLPVVVQSVTLQFININTENNEFMKKVIDWEYMLLCGSILA
CHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHH
KSDNGEHLDVAYRIAQYCLNSLETNEHQKLAATIILDSMTNASTIQLAMEKELIPATYKE
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCCCEEEEEHHHCCCCCCCCC
NVPLTFQLEMIKRGIQYSVLDQGTNNLLYVNRFQLDAYKGAMENDWTSISAPTSAGKSFI
CCCEEEEHHHHHCCCCEEEECCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHH
ILQMLIQYLKKQNNQVIVYIVPTRALIQQVEYDLHKALSVNKLGKVYVTSVPIFPKDMEN
HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
ESVVFVLTQERLQWMLLDNHEIKPSMIIVDEAQKIGDGSRGILLQQVIEEIIRRTSEAKF
CCEEEEEEHHHEEEEEECCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHCCCCCEE
IFSSPMTSNPEIFLNKATSGSLTKSIVTEQVTVNQNLLWVSQVPRKPTQWNIELCLKDSR
EEECCCCCCCCEEEEECCCCCHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEEEECCE
IYLGKFAMRNRPTQVSKRLPFIAFELGNKEGGNLIYANAPAEAEKCAKILWDLQGDEADT
EEEHHHHHCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCC
TDKEIHDLIKLIKKVINKDYVLAEILTRGIAFHYGNLPLIIKNEIERLFKNGKIKYLVCT
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHCCCEEEEEEE
STLIEGMNLPAKSIFIRGPKKGIGTPMNEIDFWNLAGRAGRQGKEFQGNVICVDVTDSKL
HHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCC
WNGEPPSIKKKYVIEPSVDMVVQNIDQLIDFIEAGTPRKEASSNPELEYGFGYFLGEHIR
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHH
NDGLNNSPFLDSYEKETVKIVEKTITESLQDIEIPKEIILKNSAVSPIAQQKLLQFFKEC
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
DEEIEQYVPLLPESDEALDQYCRIVEKISGFLSGDPAAITYPHALLVVEWMRGYSLSRII
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCHHHHHH
NRNWKYWKEKNKNLQTVIRDTMRDIEEYARFKFVKYSSCYIDILKYFLECNGYEEIVKDI
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHCCCHHHHHHHC
PELSLWLEFGVSQETQISLMSLGLTRTSAIAVSEYIVATDLTPKQCIGWLKEHNLESLDL
HHHHHHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCC
SPIVVMEIYNVLSVHTKVDLLNN
CCHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA