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The map label for this gene is rpoM [H]

Identifier: 218884729

GI number: 218884729

Start: 1316651

End: 1316878

Strand: Direct

Name: rpoM [H]

Synonym: DKAM_1418

Alternate gene names: 218884729

Gene position: 1316651-1316878 (Clockwise)

Preceding gene: 218884728

Following gene: 218884730

Centisome position: 96.44

GC content: 48.25

Gene sequence:

>228_bases
TTGGGTTTCAAGGTTTCCACGAGAATCGATCACAAGCCCGGTGAGAAAACCCTTGTACTCGAAAGCGGAGGAGAGGTCAA
CCTCCCTGTTACAAGGGAAGTAACATGTCCGAAATGTGGTTGGCATGAGGCATACTACTGGGTGATTCAGACAAGGGCTG
CGGATGAACCGCCTACAAGATTCTTTAAGTGTACAAAGTGCGGTTACACTTGGAGAGAGTATGCTTAG

Upstream 100 bases:

>100_bases
GAAATGCGGTGGCTTAATGCGTCCCCGTAAAATGGATGGTAAACTGTATCTGATTTGTACTAGATGTGGGTACAAAGTAG
AGGCTGATGCATCCGAGGCA

Downstream 100 bases:

>100_bases
CATCCTCTGTACTTGATAATTTTATTTATTCGGATAACGGTAAAAGTATAGTAGGTGGTTCGAATGAGGCTTAAGTTTAG
TGACGCAGTTGCATGGAGAT

Product: DNA-directed RNA polymerase subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MGFKVSTRIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWREYA

Sequences:

>Translated_75_residues
MGFKVSTRIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWREYA
>Mature_74_residues
GFKVSTRIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWREYA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8671; Mature: 8540

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKVSTRIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTR
CCEECCCCCCCCCCCEEEEEECCCEECCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCC
FFKCTKCGYTWREYA
EEEECCCCCEEECCC
>Mature Secondary Structure 
GFKVSTRIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTR
CEECCCCCCCCCCCEEEEEECCCEECCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCC
FFKCTKCGYTWREYA
EEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8502569 [H]