Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
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Accession | NC_011766 |
Length | 1,365,223 |
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The map label for this gene is 218884562
Identifier: 218884562
GI number: 218884562
Start: 1171827
End: 1172339
Strand: Direct
Name: 218884562
Synonym: DKAM_1251
Alternate gene names: NA
Gene position: 1171827-1172339 (Clockwise)
Preceding gene: 218884561
Following gene: 218884563
Centisome position: 85.83
GC content: 38.4
Gene sequence:
>513_bases ATGAGTAACAACATACTCGATGTCTCCAGGCTTTTAGGTAACACTTACAGGATACGGTTCCTAGGTAGAGATATCTATGT AGAGATAAGTATCTGTAGCAAGACATGTGATTCTCTTGATGAAGAAATAGCCTCCTTAAACCCCGCTGATAACAGTGTCC TAGCCATTATTCCTCGAAGTATGGTTTCAAATGTCTCCCAGATAATTCAGGGAGCAATACATTTAATAATATACGAGGAC AGGTTAACCAGGTTTAGAAATAAAGGGCTACTATTAATGATGCTCTCAACAGGTTATAATCAAATATCTGAGATGCTTTT AGAAGCAAGAAAGATGTTCAGTAAGGATAACGAATATTATCTGGTAAAAGTATACAGGGATAGCACCGAAACACGGTCTC CCTCATCGAGGAGTATAACAGGGAATTGTAGACCTGTCGAAGAACCCAAATGCGGTGAAGACTGTTTAAGATTACTTGTA AAAAACTTGTCTGTCTTACTGGGATTACTGTAG
Upstream 100 bases:
>100_bases GGCTTGTGGAGACACAGTCCAAGAAGATGCGGAATTTAATAGCTGGATATGTCACGCATCTAGTGTCTCTTCGCTTGAAA CGTGAGGCAGCGGCCAAGCA
Downstream 100 bases:
>100_bases TGTCTCTACCATTCCTCTTCTTCCCACTCCTCTTCTTCCCATTCTTCCTCTTCCCACTCTTCTTCCCATTCCTCTTCCCA TTCTTCCTCAAGCCACATCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MSNNILDVSRLLGNTYRIRFLGRDIYVEISICSKTCDSLDEEIASLNPADNSVLAIIPRSMVSNVSQIIQGAIHLIIYED RLTRFRNKGLLLMMLSTGYNQISEMLLEARKMFSKDNEYYLVKVYRDSTETRSPSSRSITGNCRPVEEPKCGEDCLRLLV KNLSVLLGLL
Sequences:
>Translated_170_residues MSNNILDVSRLLGNTYRIRFLGRDIYVEISICSKTCDSLDEEIASLNPADNSVLAIIPRSMVSNVSQIIQGAIHLIIYED RLTRFRNKGLLLMMLSTGYNQISEMLLEARKMFSKDNEYYLVKVYRDSTETRSPSSRSITGNCRPVEEPKCGEDCLRLLV KNLSVLLGLL >Mature_169_residues SNNILDVSRLLGNTYRIRFLGRDIYVEISICSKTCDSLDEEIASLNPADNSVLAIIPRSMVSNVSQIIQGAIHLIIYEDR LTRFRNKGLLLMMLSTGYNQISEMLLEARKMFSKDNEYYLVKVYRDSTETRSPSSRSITGNCRPVEEPKCGEDCLRLLVK NLSVLLGLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19286; Mature: 19154
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNILDVSRLLGNTYRIRFLGRDIYVEISICSKTCDSLDEEIASLNPADNSVLAIIPRS CCCCHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECHH MVSNVSQIIQGAIHLIIYEDRLTRFRNKGLLLMMLSTGYNQISEMLLEARKMFSKDNEYY HHHHHHHHHHHHHHEEEEHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEE LVKVYRDSTETRSPSSRSITGNCRPVEEPKCGEDCLRLLVKNLSVLLGLL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNNILDVSRLLGNTYRIRFLGRDIYVEISICSKTCDSLDEEIASLNPADNSVLAIIPRS CCCHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECHH MVSNVSQIIQGAIHLIIYEDRLTRFRNKGLLLMMLSTGYNQISEMLLEARKMFSKDNEYY HHHHHHHHHHHHHHEEEEHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEE LVKVYRDSTETRSPSSRSITGNCRPVEEPKCGEDCLRLLVKNLSVLLGLL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA