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The map label for this gene is rbcL [H]

Identifier: 218884451

GI number: 218884451

Start: 1072426

End: 1073772

Strand: Direct

Name: rbcL [H]

Synonym: DKAM_1140

Alternate gene names: 218884451

Gene position: 1072426-1073772 (Clockwise)

Preceding gene: 218884449

Following gene: 218884453

Centisome position: 78.55

GC content: 47.59

Gene sequence:

>1347_bases
GTGAAGTTGATGAGTGGGAAATTCGAGTTTGAAACATACCACGAGTACATAGACAAGAACTATACTCCTGACCCCAGTAA
CGATGTAATAGCTGTATACAGGGTTAAGCCTGCACAGGGATTCACTATTGAGGACGCTGCAGGGGGCGTAGCTGCTGAGA
GTAGCACTGGTACGTGGACCAGCCTTTACAATTGGTACGATGTAGGGAGAGTTAGAAGGCTGAGTGGTAAAGCATACTAC
TTCAAAGACCTTGACGATGGATCATGGATTGTGAAAATAGCATACCCAGTGGAGTTATTCGAGGAAGGAAATATACCGGG
CCTGCTGGCATCCATAGCTGGAAACATATTTGGTATGAAGCGTGTTGAAGGATTAAGACTCGAGGACATATATCTCCCCA
AGAAATTCCTCGAGTCATTTAAGGGACCCAGTAAGGGATTAAATGGTGTTAGAGAGATATTCGGGGTAAAGGATAGGCCT
ATAGTAGGCACGGTGCCGAAGCCCAAGGAGGGTTACTCACCGGAGGAAGTGGAGAAGCTGGCTTTAGAGTTGCTAAGCGG
TGGATTAGACTACATAAAAGACGACGAAAACCTGACCAGCCCAAGCTTCTGTAGGTTCGAGGCCAGAGCTAAGGCCATTA
TGAAGGTCATTGATAAAGTAGAGAAAGAGACAGGTGAGAGAAAAGTCTGGTTCGCCAATATTACCTCCGATATACGTGAA
ATGGAGAAGAGGCTGAGGCTAGTAGCAGACTACGGTAACCCATACATAATGGTTGATGTCGTGATCACCGGGTGGAGCGC
ACTGACATATATCAGGGATCTAGCAGAGGAGTATGGACTAGCAATACATGGGCACAGAGCAATGCATGCAGCCTTCACCA
GGAATCCATACCACGGCATCTCAATGTACGTGCTGGCTAAATTATACAGGATCATAGGAATAGACCAACTACACATTGGC
ACAGCCGGGGCAGGAAAACTCGAAGGCGGGAAGCTAGACGTTATAAGATACGCTAAAATACTGAGAGAGATACACTTCAA
GCCAGACCCAGATGATATGTACCACCTAGAGCAACCAATGCACCACATCAAGCCGGCAATGCCTGTCTCATCAGGTGGTT
TACACCCAGGCAACCTCCCACCAGTAATAGAGGCTCTGGGTACAAACCTGGTGCTACAAATAGGTGGTGGGGTAATAGGT
CATCCAGACGGGCCTAGAGCCGGAGCACTGGCTGTTAGACAGGCACTGGAGGCAATAATGAATAATATTCCACTAGACGA
GTACGCTAAGACACATAGAGAGCTGGCAAGAGCACTGGAGAAATGGGGCTTTGCAAAACCCATCTAG

Upstream 100 bases:

>100_bases
AGCCCCATTTACCCTTAGAAATAAATGGCGATGGTATCTCTTAACATCAATTAAAGATAAAATTTAATTGATATAAATAA
AATTAACTTTACAAAAACGG

Downstream 100 bases:

>100_bases
CTGACCTCCTTCCTGCCCTAAAGGGCGAGGCTTTCAGTTGTAAATACATTTTTACACTACCCTTATTTATTAGAGGGCCT
TGCTGATACTCTATAAAGCT

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKLMSGKFEFETYHEYIDKNYTPDPSNDVIAVYRVKPAQGFTIEDAAGGVAAESSTGTWTSLYNWYDVGRVRRLSGKAYY
FKDLDDGSWIVKIAYPVELFEEGNIPGLLASIAGNIFGMKRVEGLRLEDIYLPKKFLESFKGPSKGLNGVREIFGVKDRP
IVGTVPKPKEGYSPEEVEKLALELLSGGLDYIKDDENLTSPSFCRFEARAKAIMKVIDKVEKETGERKVWFANITSDIRE
MEKRLRLVADYGNPYIMVDVVITGWSALTYIRDLAEEYGLAIHGHRAMHAAFTRNPYHGISMYVLAKLYRIIGIDQLHIG
TAGAGKLEGGKLDVIRYAKILREIHFKPDPDDMYHLEQPMHHIKPAMPVSSGGLHPGNLPPVIEALGTNLVLQIGGGVIG
HPDGPRAGALAVRQALEAIMNNIPLDEYAKTHRELARALEKWGFAKPI

Sequences:

>Translated_448_residues
MKLMSGKFEFETYHEYIDKNYTPDPSNDVIAVYRVKPAQGFTIEDAAGGVAAESSTGTWTSLYNWYDVGRVRRLSGKAYY
FKDLDDGSWIVKIAYPVELFEEGNIPGLLASIAGNIFGMKRVEGLRLEDIYLPKKFLESFKGPSKGLNGVREIFGVKDRP
IVGTVPKPKEGYSPEEVEKLALELLSGGLDYIKDDENLTSPSFCRFEARAKAIMKVIDKVEKETGERKVWFANITSDIRE
MEKRLRLVADYGNPYIMVDVVITGWSALTYIRDLAEEYGLAIHGHRAMHAAFTRNPYHGISMYVLAKLYRIIGIDQLHIG
TAGAGKLEGGKLDVIRYAKILREIHFKPDPDDMYHLEQPMHHIKPAMPVSSGGLHPGNLPPVIEALGTNLVLQIGGGVIG
HPDGPRAGALAVRQALEAIMNNIPLDEYAKTHRELARALEKWGFAKPI
>Mature_448_residues
MKLMSGKFEFETYHEYIDKNYTPDPSNDVIAVYRVKPAQGFTIEDAAGGVAAESSTGTWTSLYNWYDVGRVRRLSGKAYY
FKDLDDGSWIVKIAYPVELFEEGNIPGLLASIAGNIFGMKRVEGLRLEDIYLPKKFLESFKGPSKGLNGVREIFGVKDRP
IVGTVPKPKEGYSPEEVEKLALELLSGGLDYIKDDENLTSPSFCRFEARAKAIMKVIDKVEKETGERKVWFANITSDIRE
MEKRLRLVADYGNPYIMVDVVITGWSALTYIRDLAEEYGLAIHGHRAMHAAFTRNPYHGISMYVLAKLYRIIGIDQLHIG
TAGAGKLEGGKLDVIRYAKILREIHFKPDPDDMYHLEQPMHHIKPAMPVSSGGLHPGNLPPVIEALGTNLVLQIGGGVIG
HPDGPRAGALAVRQALEAIMNNIPLDEYAKTHRELARALEKWGFAKPI

Specific function: Unknown

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type III subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017712
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 49949; Mature: 49949

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLMSGKFEFETYHEYIDKNYTPDPSNDVIAVYRVKPAQGFTIEDAAGGVAAESSTGTWT
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCEECCCCCCHH
SLYNWYDVGRVRRLSGKAYYFKDLDDGSWIVKIAYPVELFEEGNIPGLLASIAGNIFGMK
HHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHH
RVEGLRLEDIYLPKKFLESFKGPSKGLNGVREIFGVKDRPIVGTVPKPKEGYSPEEVEKL
HHCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHH
ALELLSGGLDYIKDDENLTSPSFCRFEARAKAIMKVIDKVEKETGERKVWFANITSDIRE
HHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
MEKRLRLVADYGNPYIMVDVVITGWSALTYIRDLAEEYGLAIHGHRAMHAAFTRNPYHGI
HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHCEEEECCHHHHHHHCCCCCCCH
SMYVLAKLYRIIGIDQLHIGTAGAGKLEGGKLDVIRYAKILREIHFKPDPDDMYHLEQPM
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
HHIKPAMPVSSGGLHPGNLPPVIEALGTNLVLQIGGGVIGHPDGPRAGALAVRQALEAIM
HHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHH
NNIPLDEYAKTHRELARALEKWGFAKPI
HCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLMSGKFEFETYHEYIDKNYTPDPSNDVIAVYRVKPAQGFTIEDAAGGVAAESSTGTWT
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCEECCCCCCHH
SLYNWYDVGRVRRLSGKAYYFKDLDDGSWIVKIAYPVELFEEGNIPGLLASIAGNIFGMK
HHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHH
RVEGLRLEDIYLPKKFLESFKGPSKGLNGVREIFGVKDRPIVGTVPKPKEGYSPEEVEKL
HHCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHH
ALELLSGGLDYIKDDENLTSPSFCRFEARAKAIMKVIDKVEKETGERKVWFANITSDIRE
HHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
MEKRLRLVADYGNPYIMVDVVITGWSALTYIRDLAEEYGLAIHGHRAMHAAFTRNPYHGI
HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHCEEEECCHHHHHHHCCCCCCCH
SMYVLAKLYRIIGIDQLHIGTAGAGKLEGGKLDVIRYAKILREIHFKPDPDDMYHLEQPM
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
HHIKPAMPVSSGGLHPGNLPPVIEALGTNLVLQIGGGVIGHPDGPRAGALAVRQALEAIM
HHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHH
NNIPLDEYAKTHRELARALEKWGFAKPI
HCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475; 12730164 [H]