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The map label for this gene is ef1B

Identifier: 218884389

GI number: 218884389

Start: 1020951

End: 1021223

Strand: Direct

Name: ef1B

Synonym: DKAM_1078

Alternate gene names: 218884389

Gene position: 1020951-1021223 (Clockwise)

Preceding gene: 218884388

Following gene: 218884390

Centisome position: 74.78

GC content: 48.35

Gene sequence:

>273_bases
ATGGCTCAGGTACTGGTAATAGTTAGAGTACTACCCGAAGACGTGGAGACACCACTGGATGAATTAAGGAAGAGAATAGC
CGGCGCGCTCCCTGAGGGATACGAGTTAAAGATGTGGGATGAAGAGCCAATAGCGTTCGGGTTAAAGGCATTGAGGCTGG
CAATAATAATGCCTGAGCAAACAGAGGGCGGTACTGAGACGCTTGAGAACCTTATAAGCCAGGTACAAGGAGTAAGCCAA
GTCGAGGTTGAGTATGTGAATAGGTTGTCCTAG

Upstream 100 bases:

>100_bases
GTGGAAAAGTATTAATTAAGAGATGCAAAAAATGTAGAAAACTAGTAGTCGAATATACTTGTCCAAACTGTGGATTCAGA
GGTCCATGAGGTGGTGGTCA

Downstream 100 bases:

>100_bases
ATTCGATTTTGTCTAAACAACCTTAAACAGTATCAAATAATCAATCCTCTTCTAAGTAGGTGATCCATATATTAATGAAA
ATAGTGATATATCTATTTTG

Product: elongation factor 1-beta

Products: NA

Alternate protein names: EF-1-beta; aEF-1beta

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MAQVLVIVRVLPEDVETPLDELRKRIAGALPEGYELKMWDEEPIAFGLKALRLAIIMPEQTEGGTETLENLISQVQGVSQ
VEVEYVNRLS

Sequences:

>Translated_90_residues
MAQVLVIVRVLPEDVETPLDELRKRIAGALPEGYELKMWDEEPIAFGLKALRLAIIMPEQTEGGTETLENLISQVQGVSQ
VEVEYVNRLS
>Mature_89_residues
AQVLVIVRVLPEDVETPLDELRKRIAGALPEGYELKMWDEEPIAFGLKALRLAIIMPEQTEGGTETLENLISQVQGVSQV
EVEYVNRLS

Specific function: Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA

COG id: COG2092

COG function: function code J; Translation elongation factor EF-1beta

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-1-beta/EF-1-delta family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EF1B_DESK1 (B8D5M3)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428771.1
- ProteinModelPortal:   B8D5M3
- GeneID:   7171182
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1078
- HOGENOM:   HBG541037
- OMA:   VALKFYV
- ProtClustDB:   PRK00435
- HAMAP:   MF_00043
- InterPro:   IPR014717
- InterPro:   IPR004542
- InterPro:   IPR014038
- Gene3D:   G3DSA:3.30.70.60
- PIRSF:   PIRSF006521
- SMART:   SM00888
- TIGRFAMs:   TIGR00489

Pfam domain/function: PF00736 EF1_GNE; SSF54984 Transl_elong_EF1B_B/D_G_exch

EC number: NA

Molecular weight: Translated: 10078; Mature: 9947

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQVLVIVRVLPEDVETPLDELRKRIAGALPEGYELKMWDEEPIAFGLKALRLAIIMPEQ
CCHHHHHHHHCCCHHCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
TEGGTETLENLISQVQGVSQVEVEYVNRLS
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AQVLVIVRVLPEDVETPLDELRKRIAGALPEGYELKMWDEEPIAFGLKALRLAIIMPEQ
CHHHHHHHHCCCHHCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
TEGGTETLENLISQVQGVSQVEVEYVNRLS
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA