Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 218884030

GI number: 218884030

Start: 692012

End: 692401

Strand: Reverse

Name: hypA [H]

Synonym: DKAM_0719

Alternate gene names: 218884030

Gene position: 692401-692012 (Counterclockwise)

Preceding gene: 218884033

Following gene: 218884029

Centisome position: 50.72

GC content: 50.0

Gene sequence:

>390_bases
ATGGTTCACGAGTGGGCTCTCGCAGAGTCAATAATATACCATGTTATGAGTCAGAGATATAGGAAAGTGAAGACGCTGAA
GATAAGGCTGGGGATACTTCAAGGCATCGACAAGGAAATACTAGGGTTCAGCCTAAGGGAGCTGGCATCGATGAATAACA
TTGAGATCAAAGATATAGTGTTCGAGGACGAGGAACCCCTATTGGAGTGCAGTACATGCGGCTACAAGTGGAGCCTTAGC
CCATCAGCACTAAGTGAGGAGGAGAGGGAAGCCATACACTTCGTGCCTGAAGCCGTCTACGCCCTGGTGAAGTGCCCTAA
GTGTGGTAGCAGGGACTTCACCATAGTCAAGGGACGCGGAGTCTCCTCAATAGAGGTGGTGTCGGAGTGA

Upstream 100 bases:

>100_bases
GTAGAAGCCCTGTATACGGCTTGTCTTCTCCATGTATACACACCATAGGTAACTATATTATGTAGAAATAAAATAAATAC
AGAGCGAGTGGTGTAGAGTC

Downstream 100 bases:

>100_bases
TCGAGGACCCGAGGATCCATAACATAGTCAGGAATCTCTCGAGCATAAGAAATGTATATGCTGTGGTGAGTAGCAAGGGG
GGTGTGGGTAAATCAACTGT

Product: hydrogenase nickel incorporation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MVHEWALAESIIYHVMSQRYRKVKTLKIRLGILQGIDKEILGFSLRELASMNNIEIKDIVFEDEEPLLECSTCGYKWSLS
PSALSEEEREAIHFVPEAVYALVKCPKCGSRDFTIVKGRGVSSIEVVSE

Sequences:

>Translated_129_residues
MVHEWALAESIIYHVMSQRYRKVKTLKIRLGILQGIDKEILGFSLRELASMNNIEIKDIVFEDEEPLLECSTCGYKWSLS
PSALSEEEREAIHFVPEAVYALVKCPKCGSRDFTIVKGRGVSSIEVVSE
>Mature_129_residues
MVHEWALAESIIYHVMSQRYRKVKTLKIRLGILQGIDKEILGFSLRELASMNNIEIKDIVFEDEEPLLECSTCGYKWSLS
PSALSEEEREAIHFVPEAVYALVKCPKCGSRDFTIVKGRGVSSIEVVSE

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 14634; Mature: 14634

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHEWALAESIIYHVMSQRYRKVKTLKIRLGILQGIDKEILGFSLRELASMNNIEIKDIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEE
FEDEEPLLECSTCGYKWSLSPSALSEEEREAIHFVPEAVYALVKCPKCGSRDFTIVKGRG
ECCCCCCEECCCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
VSSIEVVSE
CCCEEEECC
>Mature Secondary Structure
MVHEWALAESIIYHVMSQRYRKVKTLKIRLGILQGIDKEILGFSLRELASMNNIEIKDIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEE
FEDEEPLLECSTCGYKWSLSPSALSEEEREAIHFVPEAVYALVKCPKCGSRDFTIVKGRG
ECCCCCCEECCCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
VSSIEVVSE
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA