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The map label for this gene is yggB [C]

Identifier: 218884004

GI number: 218884004

Start: 664325

End: 665155

Strand: Direct

Name: yggB [C]

Synonym: DKAM_0693

Alternate gene names: 218884004

Gene position: 664325-665155 (Clockwise)

Preceding gene: 218884003

Following gene: 218884005

Centisome position: 48.66

GC content: 44.4

Gene sequence:

>831_bases
ATGATTAATTTCTCATGGATACTGGAAACAGTAATCAATGCCTTCACATCTCTAGGATTGAGTAGAGACCTGGCCTTAAG
GGTGTTCATCGCACTGATTATATTAGCGGTTGGCTACGTAGTGGTCAAGATCATTACAAGAATTACATCAAGGATTCTCC
TAAAGCTATACCCAAGGCAGATAACCATTATTGTGCTGAGGATCATATATTACTCACTCCTATTCATACTCATAGTATTG
TTTCTCACCTCGCTTGGCATAGACGTATCAGGGTTGATGCTGGCAGGCGGATTCGCTGGTCTAGTGGTTGGTGTTGCCCT
TCAGCCAGTATTAGCCAACGTGTTCGCTGGGTTATATATTATGGCTGAAAAAGTTGTTCAGCCAGGTAATGCTGTGGAGG
TGGGCAGTGTGAGCGGGGAGGTGATCTCCCTTTCAATAATGTTTACACGGATAATGACCTGGGATGGTATAATTGTCACT
GTTCCTAATAACTTATTGCTTTCCTCAATGTTGAAGAACTACAGTAAGACCATGGCTAGGCGTATTGAGATCACGGTGCC
GATAGCGTATGGTGAAGATATCGAGAAAGCATACAAGGTAATAAGGGAAGTCATCGACAAATATCCCTATACACTAGTTG
AGCCTTCCCCGGACATATTTGTTTCATCGGCAGGCGATAACGGATTACTAGTGACTATAAGGGCTTGGGTGCCAAGGCAG
TATTATTATCAGGCTGTGAAGGACCTGCCCTGGCTAATAGTGAAAGCCGTGTCAAACGCTGGCATAGAGATACCGTTCCC
CAGCTCTCAATATGGTTTAGGACACCCCTGA

Upstream 100 bases:

>100_bases
CCGCCCCAGGGTTACTTGAAGGCTGATGTTCCAGCTGAACTAAGGCCCCCGCCTATCCCTATAATAGCTTGGAAAACAGA
GATGATATGGGGTTTATGAG

Downstream 100 bases:

>100_bases
ATCTAGGACCAACCAGTAAGTAGCCCAGTGGCTTAAAACCCGATGCCTCTAGATGACTAAGTGGAGTCAGTATTATTGAT
AAGGCTGGTGTTCACTATAT

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MINFSWILETVINAFTSLGLSRDLALRVFIALIILAVGYVVVKIITRITSRILLKLYPRQITIIVLRIIYYSLLFILIVL
FLTSLGIDVSGLMLAGGFAGLVVGVALQPVLANVFAGLYIMAEKVVQPGNAVEVGSVSGEVISLSIMFTRIMTWDGIIVT
VPNNLLLSSMLKNYSKTMARRIEITVPIAYGEDIEKAYKVIREVIDKYPYTLVEPSPDIFVSSAGDNGLLVTIRAWVPRQ
YYYQAVKDLPWLIVKAVSNAGIEIPFPSSQYGLGHP

Sequences:

>Translated_276_residues
MINFSWILETVINAFTSLGLSRDLALRVFIALIILAVGYVVVKIITRITSRILLKLYPRQITIIVLRIIYYSLLFILIVL
FLTSLGIDVSGLMLAGGFAGLVVGVALQPVLANVFAGLYIMAEKVVQPGNAVEVGSVSGEVISLSIMFTRIMTWDGIIVT
VPNNLLLSSMLKNYSKTMARRIEITVPIAYGEDIEKAYKVIREVIDKYPYTLVEPSPDIFVSSAGDNGLLVTIRAWVPRQ
YYYQAVKDLPWLIVKAVSNAGIEIPFPSSQYGLGHP
>Mature_276_residues
MINFSWILETVINAFTSLGLSRDLALRVFIALIILAVGYVVVKIITRITSRILLKLYPRQITIIVLRIIYYSLLFILIVL
FLTSLGIDVSGLMLAGGFAGLVVGVALQPVLANVFAGLYIMAEKVVQPGNAVEVGSVSGEVISLSIMFTRIMTWDGIIVT
VPNNLLLSSMLKNYSKTMARRIEITVPIAYGEDIEKAYKVIREVIDKYPYTLVEPSPDIFVSSAGDNGLLVTIRAWVPRQ
YYYQAVKDLPWLIVKAVSNAGIEIPFPSSQYGLGHP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=248, Percent_Identity=25.4032258064516, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786670, Length=218, Percent_Identity=27.0642201834862, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787591, Length=214, Percent_Identity=25.7009345794392, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI2367355, Length=255, Percent_Identity=21.9607843137255, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30472; Mature: 30472

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINFSWILETVINAFTSLGLSRDLALRVFIALIILAVGYVVVKIITRITSRILLKLYPRQ
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ITIIVLRIIYYSLLFILIVLFLTSLGIDVSGLMLAGGFAGLVVGVALQPVLANVFAGLYI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAEKVVQPGNAVEVGSVSGEVISLSIMFTRIMTWDGIIVTVPNNLLLSSMLKNYSKTMAR
HHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
RIEITVPIAYGEDIEKAYKVIREVIDKYPYTLVEPSPDIFVSSAGDNGLLVTIRAWVPRQ
HEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCEEEEEEHHCCHH
YYYQAVKDLPWLIVKAVSNAGIEIPFPSSQYGLGHP
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
>Mature Secondary Structure
MINFSWILETVINAFTSLGLSRDLALRVFIALIILAVGYVVVKIITRITSRILLKLYPRQ
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ITIIVLRIIYYSLLFILIVLFLTSLGIDVSGLMLAGGFAGLVVGVALQPVLANVFAGLYI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAEKVVQPGNAVEVGSVSGEVISLSIMFTRIMTWDGIIVTVPNNLLLSSMLKNYSKTMAR
HHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
RIEITVPIAYGEDIEKAYKVIREVIDKYPYTLVEPSPDIFVSSAGDNGLLVTIRAWVPRQ
HEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCEEEEEEHHCCHH
YYYQAVKDLPWLIVKAVSNAGIEIPFPSSQYGLGHP
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]