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The map label for this gene is ydcR [C]

Identifier: 218883980

GI number: 218883980

Start: 641799

End: 643028

Strand: Direct

Name: ydcR [C]

Synonym: DKAM_0669

Alternate gene names: 218883980

Gene position: 641799-643028 (Clockwise)

Preceding gene: 218883979

Following gene: 218883983

Centisome position: 47.01

GC content: 45.53

Gene sequence:

>1230_bases
TTGAAACCCGTCTACGATAGATTTCTTAGTAGTAGGATAAATTATATCGAGCAAAGCCCTATTCGAGATGCAGTAGCAAA
AATCGCGGCTAAATCTAAAACCACCAAGGTAATAAGCTTCGCAGCTGGTGAGCCAGACCCGGATGTCATACCCCGTGAAC
TATATGGGGAACTAGCCAAAGAGGTATTTATTAAAGAGAAGGGGAGTGTTAACTACTCGCCTGCAGATGGACTCTCCGAG
TTAAAGATTGAGATAGCTAAATTCATGGCCGAGTATGAGGGTGTGAAGACTGGGTCCGATAATATCGTGGTTACTCTTGG
GGGTAGCCAGGCAATAGACATCCTGGGGAGACTAATACTGGATCCAGGCGACATCGTCATCGTTGAAAACCCCTCTTATG
TTAACACGATACTGGTTTGGAAACACTACGGGGTAAGGATAATTGGTGTACCCATGGATGATAATGGAATGATCACTGAG
AAACTTGAAGATGTGGTTAAACGCCTCCATAGTGAGGGCAAGAAGCTTAAGCTAATATACACGATACCAACAGGACAGAA
TCCATCAGGTGTGACCATGAGCATGGATAGGAGGAAGCACTTGCTCGAAATAGCTAGCAGGTATGATCTACTAGTGGCTG
AGGACGCAGCATATAATCACCTGGTGTACGAACCCGTAGACGTGAAGCCGCTTAGATCAATGGATACCGAGGACCGTGTG
ATATACATTGGGTCCTTTAGCAAGATATTTGGAACAGGTCTCCGTATAGGATGGCTTGAGGCCCACCCGGAGATAATTGG
AAGAGTCCGTGTAGCTAAGGGACCAATGGATATGTGTCCACCGGTTCCCTCGCAATACATTGTTCTAAACCTATTGAGGA
ACAAGCTATACAGGCCTATAAGAGAGAAAGCCGTGGCCGAGTATAAGTCTAAGAGAGATATAATGATCGCCGCCATAGAG
AAACACCTAATGGGGTTAAAACACACGAGGCCTGTTGCGGGCATGTTTATACTGCTCTGGCTACCTGGAGGCATTGATGG
AAGAATGTTCTCGGATCAACTCTTAGAAAAGTATAATGTGGCGGTTATACCTGCAGCGGCATTCTATACTGATGAGACAG
GGAGGAATATTGTCAGGCTAAACTTCTCGATGAGTGAGAAAGACCTTATTGAGGAGGGGATAAGGAGAATAAGCATGTTG
CTCAAGGAGTTCAAGACGTCTATCCCATGA

Upstream 100 bases:

>100_bases
ACTTGTTTTATACTTGATGCATGATAATATATAATAATATATAATATATAGATAGATTTATATGCTCTGGAACGAGTGAT
TTATTCTCGGTGGTGATGCA

Downstream 100 bases:

>100_bases
GACCTTTGGGAGCATAGTACTTTTTATTCGAGGCTTTCTCCAGGGTGGCCGGGCTAGAGTAAACGTGCCATTACAAGTAT
CTTTAAACTGGTAGCGCTTA

Product: Alanine glyoxylate transaminase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKPVYDRFLSSRINYIEQSPIRDAVAKIAAKSKTTKVISFAAGEPDPDVIPRELYGELAKEVFIKEKGSVNYSPADGLSE
LKIEIAKFMAEYEGVKTGSDNIVVTLGGSQAIDILGRLILDPGDIVIVENPSYVNTILVWKHYGVRIIGVPMDDNGMITE
KLEDVVKRLHSEGKKLKLIYTIPTGQNPSGVTMSMDRRKHLLEIASRYDLLVAEDAAYNHLVYEPVDVKPLRSMDTEDRV
IYIGSFSKIFGTGLRIGWLEAHPEIIGRVRVAKGPMDMCPPVPSQYIVLNLLRNKLYRPIREKAVAEYKSKRDIMIAAIE
KHLMGLKHTRPVAGMFILLWLPGGIDGRMFSDQLLEKYNVAVIPAAAFYTDETGRNIVRLNFSMSEKDLIEEGIRRISML
LKEFKTSIP

Sequences:

>Translated_409_residues
MKPVYDRFLSSRINYIEQSPIRDAVAKIAAKSKTTKVISFAAGEPDPDVIPRELYGELAKEVFIKEKGSVNYSPADGLSE
LKIEIAKFMAEYEGVKTGSDNIVVTLGGSQAIDILGRLILDPGDIVIVENPSYVNTILVWKHYGVRIIGVPMDDNGMITE
KLEDVVKRLHSEGKKLKLIYTIPTGQNPSGVTMSMDRRKHLLEIASRYDLLVAEDAAYNHLVYEPVDVKPLRSMDTEDRV
IYIGSFSKIFGTGLRIGWLEAHPEIIGRVRVAKGPMDMCPPVPSQYIVLNLLRNKLYRPIREKAVAEYKSKRDIMIAAIE
KHLMGLKHTRPVAGMFILLWLPGGIDGRMFSDQLLEKYNVAVIPAAAFYTDETGRNIVRLNFSMSEKDLIEEGIRRISML
LKEFKTSIP
>Mature_409_residues
MKPVYDRFLSSRINYIEQSPIRDAVAKIAAKSKTTKVISFAAGEPDPDVIPRELYGELAKEVFIKEKGSVNYSPADGLSE
LKIEIAKFMAEYEGVKTGSDNIVVTLGGSQAIDILGRLILDPGDIVIVENPSYVNTILVWKHYGVRIIGVPMDDNGMITE
KLEDVVKRLHSEGKKLKLIYTIPTGQNPSGVTMSMDRRKHLLEIASRYDLLVAEDAAYNHLVYEPVDVKPLRSMDTEDRV
IYIGSFSKIFGTGLRIGWLEAHPEIIGRVRVAKGPMDMCPPVPSQYIVLNLLRNKLYRPIREKAVAEYKSKRDIMIAAIE
KHLMGLKHTRPVAGMFILLWLPGGIDGRMFSDQLLEKYNVAVIPAAAFYTDETGRNIVRLNFSMSEKDLIEEGIRRISML
LKEFKTSIP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=423, Percent_Identity=28.8416075650118, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI33469970, Length=423, Percent_Identity=28.8416075650118, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI4507369, Length=407, Percent_Identity=23.5872235872236, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI149944424, Length=312, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787710, Length=377, Percent_Identity=24.9336870026525, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790797, Length=384, Percent_Identity=25.78125, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1788722, Length=384, Percent_Identity=23.6979166666667, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17567369, Length=350, Percent_Identity=25.4285714285714, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=297, Percent_Identity=29.6296296296296, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6321000, Length=431, Percent_Identity=23.8979118329466, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321929, Length=416, Percent_Identity=21.6346153846154, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322401, Length=362, Percent_Identity=24.0331491712707, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356535, Length=393, Percent_Identity=27.4809160305344, Blast_Score=135, Evalue=5e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 45938; Mature: 45938

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVYDRFLSSRINYIEQSPIRDAVAKIAAKSKTTKVISFAAGEPDPDVIPRELYGELAK
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
EVFIKEKGSVNYSPADGLSELKIEIAKFMAEYEGVKTGSDNIVVTLGGSQAIDILGRLIL
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHC
DPGDIVIVENPSYVNTILVWKHYGVRIIGVPMDDNGMITEKLEDVVKRLHSEGKKLKLIY
CCCCEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
TIPTGQNPSGVTMSMDRRKHLLEIASRYDLLVAEDAAYNHLVYEPVDVKPLRSMDTEDRV
EECCCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCCHHCCCCCCCCE
IYIGSFSKIFGTGLRIGWLEAHPEIIGRVRVAKGPMDMCPPVPSQYIVLNLLRNKLYRPI
EEEECCHHHHHCCCEEEEEECCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
REKAVAEYKSKRDIMIAAIEKHLMGLKHTRPVAGMFILLWLPGGIDGRMFSDQLLEKYNV
HHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCE
AVIPAAAFYTDETGRNIVRLNFSMSEKDLIEEGIRRISMLLKEFKTSIP
EEEEEHHEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPVYDRFLSSRINYIEQSPIRDAVAKIAAKSKTTKVISFAAGEPDPDVIPRELYGELAK
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
EVFIKEKGSVNYSPADGLSELKIEIAKFMAEYEGVKTGSDNIVVTLGGSQAIDILGRLIL
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHC
DPGDIVIVENPSYVNTILVWKHYGVRIIGVPMDDNGMITEKLEDVVKRLHSEGKKLKLIY
CCCCEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
TIPTGQNPSGVTMSMDRRKHLLEIASRYDLLVAEDAAYNHLVYEPVDVKPLRSMDTEDRV
EECCCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCCHHCCCCCCCCE
IYIGSFSKIFGTGLRIGWLEAHPEIIGRVRVAKGPMDMCPPVPSQYIVLNLLRNKLYRPI
EEEECCHHHHHCCCEEEEEECCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
REKAVAEYKSKRDIMIAAIEKHLMGLKHTRPVAGMFILLWLPGGIDGRMFSDQLLEKYNV
HHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCE
AVIPAAAFYTDETGRNIVRLNFSMSEKDLIEEGIRRISMLLKEFKTSIP
EEEEEHHEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]