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The map label for this gene is ybjZ [C]

Identifier: 218883804

GI number: 218883804

Start: 460071

End: 461288

Strand: Reverse

Name: ybjZ [C]

Synonym: DKAM_0493

Alternate gene names: 218883804

Gene position: 461288-460071 (Counterclockwise)

Preceding gene: 218883805

Following gene: 218883802

Centisome position: 33.79

GC content: 46.72

Gene sequence:

>1218_bases
ATGCTGGTTAGCGATATATTAAAGCTCAGCATCAGGACGCTCTCGGAGAAGAAACTCAGGGCGGTTTTAACAATCATAGG
AATAGCCATAGGTCCCATGGCTTTGATGACCATAGGAGGCGTCACTTCGGGCTACGGTGATTTCATAGTCAACAGTATCA
TGGGACTCGGGCAAAACCTCATAGTTGTAACACCAAGCAGGGATTACAAGCTTACACAGGATGACTTGGATACGCTTAAA
AACATAGAAGGAGTGGTCGATGCGTCGCCATTCTATTCGACACAGGGCGAAATGTATATTGGAGGCGAGAAGAAAACCGT
CTTCATCTATGGGGTGAACCCGGATTTCCTACTGAAAGCTTTAACCAGCCTCACAGTTAAAGAGGGTAGAACTCCCTCCG
AAAGCGATCTCGGTAGAGCACTGGTGGGTTATAAGATAGCTTACAGTGATAACGGTGAGCCAGAGTACAGTGTAGGTGAT
GTGGTCTCAGTCACGGTCTACCAGGTCAAGACAGGTGGTAAAGTAGAGGTTAAAAGGCTCAGTGTCGTTGTATCCGGTGT
ACTAGATAAATATGGGGGTGCAGCCTTTCTAAACCCTGATCAAACAATCTTCGTGCCCATGAATACAGTTGAGAAAATGC
TTGGCGTAAAAGACTGGAGCGGTATCCTTCTACTCGCTGAATCACCAAATATAGTCGACGAGGTATCGAACAGGATAAGA
AGCATGTACGGTGGCAACCTCGACGTGATCTCCTTCCTAGCCATAGCTAGGATAGCCTCAAGCATTGTCTCAGCAGTCAA
CTTTATAACCTTCGCAGCCACCCTATCGGCATTCGCTGTAGCTGTAGCGGGAACTGCTTCAACAATGATAACCAGCGTCG
TGGAGCGTACAAGAGAGATAGGTGTTATGAAGGCCCTTGGATTCAAGGATACCCAGGTACTTGCCCTGATAATAATGGAG
GGTGTCACGATGAGTATTATCGGGTGTGCCATAGGTGTACTAGTAGGTTTTATCGGTGCACATCTCCTATCAACTCACGG
GCTAGTTATATCAAGCGGGGAAGCCTTCACCATGAGCATACAGGCTTCACCAAAGATAACCGTAGAGCTTATGGCTGAAA
CAATATTGCTAACCATATTAACAGGCATACTTGGATCAATATTCCCAGCTTACCGCGCTATGAAGATACCGCCTGCAGTA
GCATTGAGATACGAGTAG

Upstream 100 bases:

>100_bases
TACTACCTAGCTGTGATATTAGTTGTGGCGCTATTCCTTGTCGCCGTGTTTTACCTGCTATATAGGTATATAAGCAGACA
CAGGATCACGGTTGGTGAAA

Downstream 100 bases:

>100_bases
CCCGTGTACATTAACCACTCCGTGTTTTTCATGCATTAGATTAATCATTGTTTAAGTGTATAGCTAAATACCGTTGAAAG
TATTCAACAGTGATATTTGT

Product: putative ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MLVSDILKLSIRTLSEKKLRAVLTIIGIAIGPMALMTIGGVTSGYGDFIVNSIMGLGQNLIVVTPSRDYKLTQDDLDTLK
NIEGVVDASPFYSTQGEMYIGGEKKTVFIYGVNPDFLLKALTSLTVKEGRTPSESDLGRALVGYKIAYSDNGEPEYSVGD
VVSVTVYQVKTGGKVEVKRLSVVVSGVLDKYGGAAFLNPDQTIFVPMNTVEKMLGVKDWSGILLLAESPNIVDEVSNRIR
SMYGGNLDVISFLAIARIASSIVSAVNFITFAATLSAFAVAVAGTASTMITSVVERTREIGVMKALGFKDTQVLALIIME
GVTMSIIGCAIGVLVGFIGAHLLSTHGLVISSGEAFTMSIQASPKITVELMAETILLTILTGILGSIFPAYRAMKIPPAV
ALRYE

Sequences:

>Translated_405_residues
MLVSDILKLSIRTLSEKKLRAVLTIIGIAIGPMALMTIGGVTSGYGDFIVNSIMGLGQNLIVVTPSRDYKLTQDDLDTLK
NIEGVVDASPFYSTQGEMYIGGEKKTVFIYGVNPDFLLKALTSLTVKEGRTPSESDLGRALVGYKIAYSDNGEPEYSVGD
VVSVTVYQVKTGGKVEVKRLSVVVSGVLDKYGGAAFLNPDQTIFVPMNTVEKMLGVKDWSGILLLAESPNIVDEVSNRIR
SMYGGNLDVISFLAIARIASSIVSAVNFITFAATLSAFAVAVAGTASTMITSVVERTREIGVMKALGFKDTQVLALIIME
GVTMSIIGCAIGVLVGFIGAHLLSTHGLVISSGEAFTMSIQASPKITVELMAETILLTILTGILGSIFPAYRAMKIPPAV
ALRYE
>Mature_405_residues
MLVSDILKLSIRTLSEKKLRAVLTIIGIAIGPMALMTIGGVTSGYGDFIVNSIMGLGQNLIVVTPSRDYKLTQDDLDTLK
NIEGVVDASPFYSTQGEMYIGGEKKTVFIYGVNPDFLLKALTSLTVKEGRTPSESDLGRALVGYKIAYSDNGEPEYSVGD
VVSVTVYQVKTGGKVEVKRLSVVVSGVLDKYGGAAFLNPDQTIFVPMNTVEKMLGVKDWSGILLLAESPNIVDEVSNRIR
SMYGGNLDVISFLAIARIASSIVSAVNFITFAATLSAFAVAVAGTASTMITSVVERTREIGVMKALGFKDTQVLALIIME
GVTMSIIGCAIGVLVGFIGAHLLSTHGLVISSGEAFTMSIQASPKITVELMAETILLTILTGILGSIFPAYRAMKIPPAV
ALRYE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1787105, Length=425, Percent_Identity=24.4705882352941, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43058; Mature: 43058

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSDILKLSIRTLSEKKLRAVLTIIGIAIGPMALMTIGGVTSGYGDFIVNSIMGLGQNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE
IVVTPSRDYKLTQDDLDTLKNIEGVVDASPFYSTQGEMYIGGEKKTVFIYGVNPDFLLKA
EEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHH
LTSLTVKEGRTPSESDLGRALVGYKIAYSDNGEPEYSVGDVVSVTVYQVKTGGKVEVKRL
HHHHHHHCCCCCCHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEHHHH
SVVVSGVLDKYGGAAFLNPDQTIFVPMNTVEKMLGVKDWSGILLLAESPNIVDEVSNRIR
HHHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
SMYGGNLDVISFLAIARIASSIVSAVNFITFAATLSAFAVAVAGTASTMITSVVERTREI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
GVMKALGFKDTQVLALIIMEGVTMSIIGCAIGVLVGFIGAHLLSTHGLVISSGEAFTMSI
HHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEE
QASPKITVELMAETILLTILTGILGSIFPAYRAMKIPPAVALRYE
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MLVSDILKLSIRTLSEKKLRAVLTIIGIAIGPMALMTIGGVTSGYGDFIVNSIMGLGQNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE
IVVTPSRDYKLTQDDLDTLKNIEGVVDASPFYSTQGEMYIGGEKKTVFIYGVNPDFLLKA
EEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHHHH
LTSLTVKEGRTPSESDLGRALVGYKIAYSDNGEPEYSVGDVVSVTVYQVKTGGKVEVKRL
HHHHHHHCCCCCCHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEHHHH
SVVVSGVLDKYGGAAFLNPDQTIFVPMNTVEKMLGVKDWSGILLLAESPNIVDEVSNRIR
HHHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
SMYGGNLDVISFLAIARIASSIVSAVNFITFAATLSAFAVAVAGTASTMITSVVERTREI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
GVMKALGFKDTQVLALIIMEGVTMSIIGCAIGVLVGFIGAHLLSTHGLVISSGEAFTMSI
HHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEE
QASPKITVELMAETILLTILTGILGSIFPAYRAMKIPPAVALRYE
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]