| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is amyA [H]
Identifier: 218883662
GI number: 218883662
Start: 323325
End: 325265
Strand: Direct
Name: amyA [H]
Synonym: DKAM_0351
Alternate gene names: 218883662
Gene position: 323325-325265 (Clockwise)
Preceding gene: 218883661
Following gene: 218883663
Centisome position: 23.68
GC content: 44.82
Gene sequence:
>1941_bases GTGGTATATATGTCAAAGGTAAACTTCATATTTGCACTTCACTTCCATCAGCCCACCGGTCAGTTAAAGAGGATAAATGA AAAGATATTTGAAAACAGCTATAAATTATTACTAGATGTCTTCAAGTCCTTTTCTGACCTGAAGTTCACGATACATATAA GTGGCCCCCTCCTACTCTACTTAGCTAAAAACCACCCTGAATGGCTTGAAGAAGTCTTTAAACTAGGCGATCTAGGCTCA CTTGAATTCATGGCTGGTAGTATTGGCGAGTCAATACTGCCTATAATACCGAGGGACGACAGGGAATACCAGATAAGGGA GTACATTAAGATATTTGAGGAGCTCTCGGGCTTTAAGCCGAGGGGTCTATGGATACCTGAAAGAATATGGGAGCCGCATT TACCTGAGGTTATAGGGAGGCTTGGATTAGAGTACGTGTTCATAGATGACTCGACCTTAACCAAGACAGGGTACCCCCAT GACCTGGCTTATTACTCGTGGATCACTGAGGATAGTGGACAAGTAGTAAGGGTCTTCTTCATAGATGCTGGGATAAGGTA TATTCTGCCCTGGGAACCACCGCAGAGGGTCCTCGAGTACCTTATCGGTAAGATAAAGGAGGGTGATCCAGCGAGGCTCA TCTTATGGGGTAGTGACGCGGAGAAGTTTGGGGAGTGGATGGACTCGGGACATAGTAGAAGCTGGCTCTACGCATTCCTA GACTTGATGAGGAGAACCCGTAGCAGGGTATCTATGATCCATCCAAGCGAATATCTTAGTGAATACGGGGTTAAAGGATT ACTATACCTCGATACTGGGAGCTATGATAAAATGCTTGAGTGGAGCAGAGGTTTCTTCAGAAACTTCCTGGTGAAGTACA AGGAAGCAGACAACATGCATAAGAAGATGTTATGGGTTAAAAAGAAGCTGGAGAAAGCTGGTGATTTACCTAGAGAGCTA AGAGTAGAGTATCTCCTCGCACAGTGTAATGATGCATACTGGCATGGATTATTTGGAGGCGTGTATCTGGCGCACTTGAG GCAGGCAATATATGAGAAACTCCTCAAGGTTGAGAGGTGGGCTGAGGAGAAAAGCAATTACTTCAGCGGCGAGGACTTCA GAAAGATGATGGTAGATTTCGACTATGATGGCTTATCAGAACTATTACTTGAGACACCGATGCAAAACCTATATATAAAG CCAAGTGATGGCGGGACACTCTTCGAGTACGATGTGAAAATCAAGGGGTTCGAGCATAATCTACAGGACACTATGACAAG ATACGGTGAGCCATACCTAAATAAACCTGGATTCAATCCAGACTGGTATAGAAGGGTGAGCTGGAGGCTACATCTATGGA GCCCGGATACAGGTCTCTACGACTGGATAAACAATACGCCGTTTAAAGACATGAGCGATCTAGCGTTAAAGAACTACCAT GTAGCCTCAGGAGAGGAAGGAGAGGTTGTTCTAAGAGCCCTAGGCGGGTTCTACCAGTATGGCAGTCCACCAGTAATGGT TACAGCGGAAAAAATGGTGCGTTTAACAAGCAATGGTCACACCACGTTGTTCAGGGTTAGAAACATCGGTGATAGAGAGT TCACGGCTAAATTAGGCATAGAGTACCATGTTGCATGGAAGATAGATAGAGAGAACGAGGCGAAACCATACTACACCATA AACGGCGTAAACAGAGATGTAAGTGAGGGAGGGGTATTCAACACCGAGAGAATAACTATAAAATCCCCCGTCTACCCAGG CATAAGGTTAGAGAGCAATACTCATCACGAGGTATGGATTGCCCAGCTCTCATCATACTCTAGAACCGAGAAAGGATTTA TGGAGATACCACAGGGTCTGGCAATAATGTTCGTGGAACAGCTCTCATTGAAACCTGGTGAGGAATATGAGACAAGTATA TCCTGGATCCTGGAAATATAG
Upstream 100 bases:
>100_bases AGACGTTGTAGAAGAATTAAGGAGGCTACGTGAAAACATTATTTCATATAGCGAGCTTATCTCAACACTTAAGAAACTGC TCTTGGAAATAATCGAGTAG
Downstream 100 bases:
>100_bases TGAAGGGTGCTTTCAGCTTGAAAGCATGGATGTTCGCGTTTGAATCAATATATACTAGGAAAGTGGGAGGACTAGCCGAA GTACCACCAAGGCTCGCTAA
Product: glycoside hydrolase, family 57
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MVYMSKVNFIFALHFHQPTGQLKRINEKIFENSYKLLLDVFKSFSDLKFTIHISGPLLLYLAKNHPEWLEEVFKLGDLGS LEFMAGSIGESILPIIPRDDREYQIREYIKIFEELSGFKPRGLWIPERIWEPHLPEVIGRLGLEYVFIDDSTLTKTGYPH DLAYYSWITEDSGQVVRVFFIDAGIRYILPWEPPQRVLEYLIGKIKEGDPARLILWGSDAEKFGEWMDSGHSRSWLYAFL DLMRRTRSRVSMIHPSEYLSEYGVKGLLYLDTGSYDKMLEWSRGFFRNFLVKYKEADNMHKKMLWVKKKLEKAGDLPREL RVEYLLAQCNDAYWHGLFGGVYLAHLRQAIYEKLLKVERWAEEKSNYFSGEDFRKMMVDFDYDGLSELLLETPMQNLYIK PSDGGTLFEYDVKIKGFEHNLQDTMTRYGEPYLNKPGFNPDWYRRVSWRLHLWSPDTGLYDWINNTPFKDMSDLALKNYH VASGEEGEVVLRALGGFYQYGSPPVMVTAEKMVRLTSNGHTTLFRVRNIGDREFTAKLGIEYHVAWKIDRENEAKPYYTI NGVNRDVSEGGVFNTERITIKSPVYPGIRLESNTHHEVWIAQLSSYSRTEKGFMEIPQGLAIMFVEQLSLKPGEEYETSI SWILEI
Sequences:
>Translated_646_residues MVYMSKVNFIFALHFHQPTGQLKRINEKIFENSYKLLLDVFKSFSDLKFTIHISGPLLLYLAKNHPEWLEEVFKLGDLGS LEFMAGSIGESILPIIPRDDREYQIREYIKIFEELSGFKPRGLWIPERIWEPHLPEVIGRLGLEYVFIDDSTLTKTGYPH DLAYYSWITEDSGQVVRVFFIDAGIRYILPWEPPQRVLEYLIGKIKEGDPARLILWGSDAEKFGEWMDSGHSRSWLYAFL DLMRRTRSRVSMIHPSEYLSEYGVKGLLYLDTGSYDKMLEWSRGFFRNFLVKYKEADNMHKKMLWVKKKLEKAGDLPREL RVEYLLAQCNDAYWHGLFGGVYLAHLRQAIYEKLLKVERWAEEKSNYFSGEDFRKMMVDFDYDGLSELLLETPMQNLYIK PSDGGTLFEYDVKIKGFEHNLQDTMTRYGEPYLNKPGFNPDWYRRVSWRLHLWSPDTGLYDWINNTPFKDMSDLALKNYH VASGEEGEVVLRALGGFYQYGSPPVMVTAEKMVRLTSNGHTTLFRVRNIGDREFTAKLGIEYHVAWKIDRENEAKPYYTI NGVNRDVSEGGVFNTERITIKSPVYPGIRLESNTHHEVWIAQLSSYSRTEKGFMEIPQGLAIMFVEQLSLKPGEEYETSI SWILEI >Mature_646_residues MVYMSKVNFIFALHFHQPTGQLKRINEKIFENSYKLLLDVFKSFSDLKFTIHISGPLLLYLAKNHPEWLEEVFKLGDLGS LEFMAGSIGESILPIIPRDDREYQIREYIKIFEELSGFKPRGLWIPERIWEPHLPEVIGRLGLEYVFIDDSTLTKTGYPH DLAYYSWITEDSGQVVRVFFIDAGIRYILPWEPPQRVLEYLIGKIKEGDPARLILWGSDAEKFGEWMDSGHSRSWLYAFL DLMRRTRSRVSMIHPSEYLSEYGVKGLLYLDTGSYDKMLEWSRGFFRNFLVKYKEADNMHKKMLWVKKKLEKAGDLPREL RVEYLLAQCNDAYWHGLFGGVYLAHLRQAIYEKLLKVERWAEEKSNYFSGEDFRKMMVDFDYDGLSELLLETPMQNLYIK PSDGGTLFEYDVKIKGFEHNLQDTMTRYGEPYLNKPGFNPDWYRRVSWRLHLWSPDTGLYDWINNTPFKDMSDLALKNYH VASGEEGEVVLRALGGFYQYGSPPVMVTAEKMVRLTSNGHTTLFRVRNIGDREFTAKLGIEYHVAWKIDRENEAKPYYTI NGVNRDVSEGGVFNTERITIKSPVYPGIRLESNTHHEVWIAQLSSYSRTEKGFMEIPQGLAIMFVEQLSLKPGEEYETSI SWILEI
Specific function: This amylase is a highly liquefying-type:oligomers appeared at the beginning of incubation, followed by a graded decrease in the amounts of maltotriose, maltose and glucose in prolonged incubation [H]
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 57 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015179 - InterPro: IPR015178 - InterPro: IPR011013 - InterPro: IPR011330 - InterPro: IPR000602 - InterPro: IPR004300 - ProDom: PD014405 [H]
Pfam domain/function: PF09094 DUF1925; PF09095 DUF1926; PF03065 Glyco_hydro_57 [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 75587; Mature: 75587
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00445 FGGY_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYMSKVNFIFALHFHQPTGQLKRINEKIFENSYKLLLDVFKSFSDLKFTIHISGPLLLY CEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE LAKNHPEWLEEVFKLGDLGSLEFMAGSIGESILPIIPRDDREYQIREYIKIFEELSGFKP EECCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC RGLWIPERIWEPHLPEVIGRLGLEYVFIDDSTLTKTGYPHDLAYYSWITEDSGQVVRVFF CCCCCCHHHCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCEEEEEEEECCCCCEEEEEE IDAGIRYILPWEPPQRVLEYLIGKIKEGDPARLILWGSDAEKFGEWMDSGHSRSWLYAFL EECCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHHHHH DLMRRTRSRVSMIHPSEYLSEYGVKGLLYLDTGSYDKMLEWSRGFFRNFLVKYKEADNMH HHHHHHHHHHEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH KKMLWVKKKLEKAGDLPRELRVEYLLAQCNDAYWHGLFGGVYLAHLRQAIYEKLLKVERW HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEEKSNYFSGEDFRKMMVDFDYDGLSELLLETPMQNLYIKPSDGGTLFEYDVKIKGFEHN HHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECCCCEEEEEEEEEECCCCC LQDTMTRYGEPYLNKPGFNPDWYRRVSWRLHLWSPDTGLYDWINNTPFKDMSDLALKNYH HHHHHHHCCCCCCCCCCCCHHHHEEEEEEEEEECCCCCHHHHCCCCCCCCHHHHHHHCEE VASGEEGEVVLRALGGFYQYGSPPVMVTAEKMVRLTSNGHTTLFRVRNIGDREFTAKLGI ECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHEECCCCCEEEEEEECCCCCCEEEEECE EYHVAWKIDRENEAKPYYTINGVNRDVSEGGVFNTERITIKSPVYPGIRLESNTHHEVWI EEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCHHHH AQLSSYSRTEKGFMEIPQGLAIMFVEQLSLKPGEEYETSISWILEI HHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCHHCCEEEEEEC >Mature Secondary Structure MVYMSKVNFIFALHFHQPTGQLKRINEKIFENSYKLLLDVFKSFSDLKFTIHISGPLLLY CEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE LAKNHPEWLEEVFKLGDLGSLEFMAGSIGESILPIIPRDDREYQIREYIKIFEELSGFKP EECCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC RGLWIPERIWEPHLPEVIGRLGLEYVFIDDSTLTKTGYPHDLAYYSWITEDSGQVVRVFF CCCCCCHHHCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCEEEEEEEECCCCCEEEEEE IDAGIRYILPWEPPQRVLEYLIGKIKEGDPARLILWGSDAEKFGEWMDSGHSRSWLYAFL EECCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHHHHH DLMRRTRSRVSMIHPSEYLSEYGVKGLLYLDTGSYDKMLEWSRGFFRNFLVKYKEADNMH HHHHHHHHHHEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH KKMLWVKKKLEKAGDLPRELRVEYLLAQCNDAYWHGLFGGVYLAHLRQAIYEKLLKVERW HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEEKSNYFSGEDFRKMMVDFDYDGLSELLLETPMQNLYIKPSDGGTLFEYDVKIKGFEHN HHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECCCCEEEEEEEEEECCCCC LQDTMTRYGEPYLNKPGFNPDWYRRVSWRLHLWSPDTGLYDWINNTPFKDMSDLALKNYH HHHHHHHCCCCCCCCCCCCHHHHEEEEEEEEEECCCCCHHHHCCCCCCCCHHHHHHHCEE VASGEEGEVVLRALGGFYQYGSPPVMVTAEKMVRLTSNGHTTLFRVRNIGDREFTAKLGI ECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHEECCCCCEEEEEEECCCCCCEEEEECE EYHVAWKIDRENEAKPYYTINGVNRDVSEGGVFNTERITIKSPVYPGIRLESNTHHEVWI EEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCHHHH AQLSSYSRTEKGFMEIPQGLAIMFVEQLSLKPGEEYETSISWILEI HHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCHHCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2453362 [H]