| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883651
Identifier: 218883651
GI number: 218883651
Start: 312767
End: 314026
Strand: Direct
Name: 218883651
Synonym: DKAM_0340
Alternate gene names: NA
Gene position: 312767-314026 (Clockwise)
Preceding gene: 218883650
Following gene: 218883656
Centisome position: 22.91
GC content: 43.1
Gene sequence:
>1260_bases ATGACCTTGAAGCCGCTGGTTATAAGGGAGATTAAGAACTTCCTAAGGAATCCGGCTTTCATAGCATCGATAATTATACT AGTGGTATTCTACGCGTCACTGGGAAGCATTATGAGAAGCGGCATAGAGTCAGCTGTGAAAGAGTCGTTGAGCATATCTA TAGGGATAGTCAAGGAGGAGGACACCGAGCTAGTGAGCCGCCTCATATCAATGCTTTCACAATATACTAATGGTTCTATA GGTATCTACCAGAGCCTCGAAGAAGCCGTTGATAAAACTGGGGTAGCAATAGTTATACCAAGAGGGTTTACTGAGAACGC TACACAGTCAGGAAGCACTATATTGCTTAAGGGAGGGGTCAAAATAGATAATCTCTCACCGATCACAGGACAGGCAAGGA TATCCATGCTACAGGGAATCGCGTCAATAATATCCGACATGCTTCCAGCGGCTACAGGCGTATTATATAATATATCCATA CCGCCTAGTAGGCCGGTCATGGTTGAAAGCTATGTAAGGGTATATGATAAAACCCTCACAGCCAACGAGTTCAATAGTTT TATGACCATGTTCTCCATTATACCCGTGGTGATCGGTATAATAGTAGGTATAAATGCTACTTACGCCGCCCAGGCAACAG CTATAGAGAAAGTTGAGAAAGCCTTTGAAATGCTGCTTGCTCAACCTATTCCACGTAGAAGTGTCGTGATAGCGAAGATC ATCGGCTCCGTCACTGCATCAGTGATCATGGGGGCAGCTTACATGATCGCATTATTCCTGATGCTGGTCTCAGCTATACC TGCTGGCACAGCCCTAGGTAATCGATCATCAATAAACCTAGTTGAATCAGTGATCAGTATAGGGGGAACAGGAAATATCC TGGTATCAATACTTGTAATAATCCTAGGTCTGATATATTCAGGTGCCATTGGCGTAATAATAGGCGCAGTCGTCGCTGAT GAAAGGATCGCCGGTGCCCTCTCCACACCCATAATACTGTTATTCATGGGTGTAGGATTCGCAACAATCTATATGGGTAT GCCGTTAAACATGGCGACATCTATCCTATCCGGTTTAACGATTACATCTATACCACTTGTATTAATTAATGCATCACTCT CAGGACAATATATCTATGCGTGGATATCTATTTCGATAGCCATAACCGTGTCAATATTGTTAATGGTAATTGCTATACTT GTATTCAACAGAGATATAGTCATACTGGGTCTGAGGATCTCGCTGAGGAAAAGAGAATAA
Upstream 100 bases:
>100_bases TAATAGCGGAGGGAACTATAGAGGAGTTGAAGAGTAAGACTGGTGGGAGGGATCTAGAGGAGGTATTCATTAAGCTGAAA ACAGGGGAGGGTGATCATAG
Downstream 100 bases:
>100_bases GTGGTTTACCCGTGTCTATTATTTTGCTTTAGCTTCTCTGTGCACGGGCATCCCTCTCAGCACCCGCTCACCGCTCGCGG GGTCGTCGAGGGCTTCATGA
Product: Na+ efflux ABC transporter permease
Products: NA
Alternate protein names: ABC-Type Na+ Efflux Pump Permease Component
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MTLKPLVIREIKNFLRNPAFIASIIILVVFYASLGSIMRSGIESAVKESLSISIGIVKEEDTELVSRLISMLSQYTNGSI GIYQSLEEAVDKTGVAIVIPRGFTENATQSGSTILLKGGVKIDNLSPITGQARISMLQGIASIISDMLPAATGVLYNISI PPSRPVMVESYVRVYDKTLTANEFNSFMTMFSIIPVVIGIIVGINATYAAQATAIEKVEKAFEMLLAQPIPRRSVVIAKI IGSVTASVIMGAAYMIALFLMLVSAIPAGTALGNRSSINLVESVISIGGTGNILVSILVIILGLIYSGAIGVIIGAVVAD ERIAGALSTPIILLFMGVGFATIYMGMPLNMATSILSGLTITSIPLVLINASLSGQYIYAWISISIAITVSILLMVIAIL VFNRDIVILGLRISLRKRE
Sequences:
>Translated_419_residues MTLKPLVIREIKNFLRNPAFIASIIILVVFYASLGSIMRSGIESAVKESLSISIGIVKEEDTELVSRLISMLSQYTNGSI GIYQSLEEAVDKTGVAIVIPRGFTENATQSGSTILLKGGVKIDNLSPITGQARISMLQGIASIISDMLPAATGVLYNISI PPSRPVMVESYVRVYDKTLTANEFNSFMTMFSIIPVVIGIIVGINATYAAQATAIEKVEKAFEMLLAQPIPRRSVVIAKI IGSVTASVIMGAAYMIALFLMLVSAIPAGTALGNRSSINLVESVISIGGTGNILVSILVIILGLIYSGAIGVIIGAVVAD ERIAGALSTPIILLFMGVGFATIYMGMPLNMATSILSGLTITSIPLVLINASLSGQYIYAWISISIAITVSILLMVIAIL VFNRDIVILGLRISLRKRE >Mature_418_residues TLKPLVIREIKNFLRNPAFIASIIILVVFYASLGSIMRSGIESAVKESLSISIGIVKEEDTELVSRLISMLSQYTNGSIG IYQSLEEAVDKTGVAIVIPRGFTENATQSGSTILLKGGVKIDNLSPITGQARISMLQGIASIISDMLPAATGVLYNISIP PSRPVMVESYVRVYDKTLTANEFNSFMTMFSIIPVVIGIIVGINATYAAQATAIEKVEKAFEMLLAQPIPRRSVVIAKII GSVTASVIMGAAYMIALFLMLVSAIPAGTALGNRSSINLVESVISIGGTGNILVSILVIILGLIYSGAIGVIIGAVVADE RIAGALSTPIILLFMGVGFATIYMGMPLNMATSILSGLTITSIPLVLINASLSGQYIYAWISISIAITVSILLMVIAILV FNRDIVILGLRISLRKRE
Specific function: Unknown
COG id: COG1668
COG function: function code CP; ABC-type Na+ efflux pump, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44473; Mature: 44342
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKPLVIREIKNFLRNPAFIASIIILVVFYASLGSIMRSGIESAVKESLSISIGIVKEE CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC DTELVSRLISMLSQYTNGSIGIYQSLEEAVDKTGVAIVIPRGFTENATQSGSTILLKGGV HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCE KIDNLSPITGQARISMLQGIASIISDMLPAATGVLYNISIPPSRPVMVESYVRVYDKTLT EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCC ANEFNSFMTMFSIIPVVIGIIVGINATYAAQATAIEKVEKAFEMLLAQPIPRRSVVIAKI HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH IGSVTASVIMGAAYMIALFLMLVSAIPAGTALGNRSSINLVESVISIGGTGNILVSILVI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH ILGLIYSGAIGVIIGAVVADERIAGALSTPIILLFMGVGFATIYMGMPLNMATSILSGLT HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCH ITSIPLVLINASLSGQYIYAWISISIAITVSILLMVIAILVFNRDIVILGLRISLRKRE HHHCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC >Mature Secondary Structure TLKPLVIREIKNFLRNPAFIASIIILVVFYASLGSIMRSGIESAVKESLSISIGIVKEE CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC DTELVSRLISMLSQYTNGSIGIYQSLEEAVDKTGVAIVIPRGFTENATQSGSTILLKGGV HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCE KIDNLSPITGQARISMLQGIASIISDMLPAATGVLYNISIPPSRPVMVESYVRVYDKTLT EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCC ANEFNSFMTMFSIIPVVIGIIVGINATYAAQATAIEKVEKAFEMLLAQPIPRRSVVIAKI HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH IGSVTASVIMGAAYMIALFLMLVSAIPAGTALGNRSSINLVESVISIGGTGNILVSILVI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH ILGLIYSGAIGVIIGAVVADERIAGALSTPIILLFMGVGFATIYMGMPLNMATSILSGLT HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCH ITSIPLVLINASLSGQYIYAWISISIAITVSILLMVIAILVFNRDIVILGLRISLRKRE HHHCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA