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The map label for this gene is ybiR [C]

Identifier: 218883629

GI number: 218883629

Start: 292699

End: 293985

Strand: Reverse

Name: ybiR [C]

Synonym: DKAM_0318

Alternate gene names: 218883629

Gene position: 293985-292699 (Counterclockwise)

Preceding gene: 218883631

Following gene: 218883628

Centisome position: 21.53

GC content: 46.39

Gene sequence:

>1287_bases
ATGACTCTGGTTAATCATGTTGCAGCATTAATTATATTGGCTTGGATTATAGGGGGATTGATAATTAGGTCGCGGAGGCC
AAGCATACCCATATGGGCGATAATGGCGGCTGCTTCAACCCTCACTGTCTTAACTGGTTTAGAGCCGTTTGATAAGCTTG
GTGAAGCCATAGATCTCGATGTAATATTATTCCTGATAGGCATGTTCAGCCTGGTTGGGCTCGCCGAGGGAAGCGGCCTA
CTGAAAGTCATAGCTATTAAACTGGTTTCCAGGGCCGGGTCGACCCGTGGGATACTGGTGTCTACATCCATAGTGCTGGG
GCTACTGGCAGCGTTCGCTGTTAATGATACAGTTGCATTAATGGGGCCTCCAATAGTCTATATGATGGCTAAGATAACAG
GAGTGGATCCGGTGCCATTCTTTCTAATACTAGCATTCGCAATAACAATAGGCTCAGCCATGACGCCCATGGGTAATCCA
CAGAACCTACTCATCGCGATAGAGTCGGGTATCACAGCGCCATTTATGAAGTTCATGAGCGTCCTCATTGTTCCAACACT
TGTAAACCTCGTGCTCACACCACTTGTAGTCATGAGGCTGTATAATATTGAGAACCGTGTGTTAAAGGGGTTTATCATTA
TCCCCGAGGAGCACTTGAAGAACAAGCGGGATGCACTGGTTTCAGGGGTGTTCTTCACTGTTACAATAGTTATCCTGGTG
GTGAACGATATCCTTGAAATAATGGGGTTTAAATGGATAGAGCACAGGGGATTCATACCCTTCATAATGGCTTCACTCGC
ATATATTCTCTCATCGAATCCAAGGGATACTCTTAGCAGAGTGGACTGGGGTACTATAGTGTTCTTCATAACGATGTTTA
TAACCATGGATGGTATATGGAGAAGCGGCGTCTTAACCCCCCTGTTAAACATCTTCATGAGTGCGAGGTACGGGGACTAC
AGGGACGTCTTATCAATAGCTGCTTCATCCATAGTTGTAAGCCAGCTCATCAGCAACGTCCCCTTCACAAAGCTCTTCAT
AGACTACATGCACTCACTCGGCTTCACAGGGAGAGATGTAAACGCTTGGCTCTCACTAGCAGCGTTCAGCACAATTGCAG
GCAACTTAACGCTTCTCGGCGCAGCATCAAACATAATCATCCTAGAGGTGCTTGAATCAAAGTACTCTAAGACCATATCG
TTCAGAGACTTCTTTAAAGTGGGAAGCGTGGTGACCGCGGTAAACACCCTAATATATATCCCATTCATACTTGCCTCCCC
GCCCTGA

Upstream 100 bases:

>100_bases
ACGTTCAATGCTGCAGGGTGTAGCCTGGGGGCTCCCTAATATATAAGGCGATCATGTGGTAGGTAATCAACTGGTAGCAT
CACTGCGATGGTAGACCGGT

Downstream 100 bases:

>100_bases
ATGGCGAGGCTCTTACCAGCGTGCTCTGATACAACAAGCCTTGGATCCTTGTGGTGCTTCATGAATGAGGCTAGATGAAT
GAGAGCGCTTCAGCTGACAT

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTLVNHVAALIILAWIIGGLIIRSRRPSIPIWAIMAAASTLTVLTGLEPFDKLGEAIDLDVILFLIGMFSLVGLAEGSGL
LKVIAIKLVSRAGSTRGILVSTSIVLGLLAAFAVNDTVALMGPPIVYMMAKITGVDPVPFFLILAFAITIGSAMTPMGNP
QNLLIAIESGITAPFMKFMSVLIVPTLVNLVLTPLVVMRLYNIENRVLKGFIIIPEEHLKNKRDALVSGVFFTVTIVILV
VNDILEIMGFKWIEHRGFIPFIMASLAYILSSNPRDTLSRVDWGTIVFFITMFITMDGIWRSGVLTPLLNIFMSARYGDY
RDVLSIAASSIVVSQLISNVPFTKLFIDYMHSLGFTGRDVNAWLSLAAFSTIAGNLTLLGAASNIIILEVLESKYSKTIS
FRDFFKVGSVVTAVNTLIYIPFILASPP

Sequences:

>Translated_428_residues
MTLVNHVAALIILAWIIGGLIIRSRRPSIPIWAIMAAASTLTVLTGLEPFDKLGEAIDLDVILFLIGMFSLVGLAEGSGL
LKVIAIKLVSRAGSTRGILVSTSIVLGLLAAFAVNDTVALMGPPIVYMMAKITGVDPVPFFLILAFAITIGSAMTPMGNP
QNLLIAIESGITAPFMKFMSVLIVPTLVNLVLTPLVVMRLYNIENRVLKGFIIIPEEHLKNKRDALVSGVFFTVTIVILV
VNDILEIMGFKWIEHRGFIPFIMASLAYILSSNPRDTLSRVDWGTIVFFITMFITMDGIWRSGVLTPLLNIFMSARYGDY
RDVLSIAASSIVVSQLISNVPFTKLFIDYMHSLGFTGRDVNAWLSLAAFSTIAGNLTLLGAASNIIILEVLESKYSKTIS
FRDFFKVGSVVTAVNTLIYIPFILASPP
>Mature_427_residues
TLVNHVAALIILAWIIGGLIIRSRRPSIPIWAIMAAASTLTVLTGLEPFDKLGEAIDLDVILFLIGMFSLVGLAEGSGLL
KVIAIKLVSRAGSTRGILVSTSIVLGLLAAFAVNDTVALMGPPIVYMMAKITGVDPVPFFLILAFAITIGSAMTPMGNPQ
NLLIAIESGITAPFMKFMSVLIVPTLVNLVLTPLVVMRLYNIENRVLKGFIIIPEEHLKNKRDALVSGVFFTVTIVILVV
NDILEIMGFKWIEHRGFIPFIMASLAYILSSNPRDTLSRVDWGTIVFFITMFITMDGIWRSGVLTPLLNIFMSARYGDYR
DVLSIAASSIVVSQLISNVPFTKLFIDYMHSLGFTGRDVNAWLSLAAFSTIAGNLTLLGAASNIIILEVLESKYSKTISF
RDFFKVGSVVTAVNTLIYIPFILASPP

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46576; Mature: 46444

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVNHVAALIILAWIIGGLIIRSRRPSIPIWAIMAAASTLTVLTGLEPFDKLGEAIDLD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHHH
VILFLIGMFSLVGLAEGSGLLKVIAIKLVSRAGSTRGILVSTSIVLGLLAAFAVNDTVAL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCHHH
MGPPIVYMMAKITGVDPVPFFLILAFAITIGSAMTPMGNPQNLLIAIESGITAPFMKFMS
HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
VLIVPTLVNLVLTPLVVMRLYNIENRVLKGFIIIPEEHLKNKRDALVSGVFFTVTIVILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHH
VNDILEIMGFKWIEHRGFIPFIMASLAYILSSNPRDTLSRVDWGTIVFFITMFITMDGIW
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHH
RSGVLTPLLNIFMSARYGDYRDVLSIAASSIVVSQLISNVPFTKLFIDYMHSLGFTGRDV
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
NAWLSLAAFSTIAGNLTLLGAASNIIILEVLESKYSKTISFRDFFKVGSVVTAVNTLIYI
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
PFILASPP
HHHHCCCC
>Mature Secondary Structure 
TLVNHVAALIILAWIIGGLIIRSRRPSIPIWAIMAAASTLTVLTGLEPFDKLGEAIDLD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHHH
VILFLIGMFSLVGLAEGSGLLKVIAIKLVSRAGSTRGILVSTSIVLGLLAAFAVNDTVAL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCHHH
MGPPIVYMMAKITGVDPVPFFLILAFAITIGSAMTPMGNPQNLLIAIESGITAPFMKFMS
HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
VLIVPTLVNLVLTPLVVMRLYNIENRVLKGFIIIPEEHLKNKRDALVSGVFFTVTIVILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHH
VNDILEIMGFKWIEHRGFIPFIMASLAYILSSNPRDTLSRVDWGTIVFFITMFITMDGIW
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHH
RSGVLTPLLNIFMSARYGDYRDVLSIAASSIVVSQLISNVPFTKLFIDYMHSLGFTGRDV
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
NAWLSLAAFSTIAGNLTLLGAASNIIILEVLESKYSKTISFRDFFKVGSVVTAVNTLIYI
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
PFILASPP
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]