| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218883627
Identifier: 218883627
GI number: 218883627
Start: 290885
End: 292132
Strand: Reverse
Name: 218883627
Synonym: DKAM_0316
Alternate gene names: NA
Gene position: 292132-290885 (Counterclockwise)
Preceding gene: 218883628
Following gene: 218883625
Centisome position: 21.4
GC content: 49.28
Gene sequence:
>1248_bases ATGGCTGATAGGGCTACTATTGCTGTAGTTACTGAGCCTTTTAAACCGTTTTTTGGAGGAGCTATTAGAGCTTCGAGGTC TATAGAGGCTTATAGGAAAAGCTTCGATGTTCTTGTCTACGAGCTGATTAGAACTAAATCCGATCCTACCTATTCTAGGG ATAGGAATGTGGTGAAAGTATACAGCGGCCCTGTTCTAAGGGCTCTTTACAAGCTGAGGCTTGGATTCCTCCCAGGGCTG ACACCCAACGGTATTTCGAAAAGGATGGTAAGGATTGGGAGGGATGTGTCGAAAACGGATGTTAGGGCTGTAGTCTCCCT TCACGAGGATCTCGAACTTCTCCGCCTATGCTCTATTCTGAGAGAGGAGTATGAAGCTAGATCAGCGGCATTACTGCAAT TACCGGTGTTTATCAGGGATAGGAGGAGACAGGGGGAGATAATAAGAGCGTATGATAAGTGGTATTCGGCCCTCTACCCG GGCTTGGTTAAAGAGCTGGCTGGGAAGGTTAGGACAAGGGTCAAGCTCTCTGTTTTGAGTAGCAGGAGTGTTGCCAGGCT CCTCCGTAGCTACGACCTACTGATCTCCGTGAGCAGGTCTATAGGTTATGAAATGGGGCCTGAATGGGAGTCTAGGATAC ACGCCCTAGACCCCGGGGTGGGCCTCGACGAGGAAGACCTCGGCTTAATCAAGACGGTTAAAGAGAGGGCTGTTAAAGAA GACTTTATCGTTTTCGGAGGCAGGATAGACGCCCTTAAAGGCTTTATCGAGGGCTTAGAAGTCTTCAAGGCGATTGCTAG AGCCTACAGGGATATCAAACTAGTAGCTACAGGGCGGGTGAACCCTTCCCTGAGAGAGAGGATAGTGCGCTATGCGAAGA GGATTGGTTTAGAAGACAGGCTCGTCTTACCAGGCGCTGTCCCCAGGATAGAGCGGTTCAGGTATGTTGCTAATGCGAGG CTAGTGATATACCCTAGCCATATGGATTCATACTCCTACGCTGTCCTAGAAGCCCTCCACCTAGGAACCCCTGTAGTAGC CTACGATATCCCTGCTCTGAGATTCAACTATGAGGGTGCCGAGGGCCTAGTCCTCGTTAGGGAAGGGGATGTCGAAGGAT TGGCTGCCGAAGCCTTAAACATACTCGGGTCTAAGGATATTACAGTATCTCCTCCTAGGAAGGTGAAGAAATGGGATGAG ATAGCAAGAGAAGAGGTTTCGTTAATAGAGAGGCTTGTAGAAAGCTAG
Upstream 100 bases:
>100_bases AACGGGAACTAACCGTTCTAGCATGGTATGGTCAAGGATAACTATTTTAATGATAGTGTCATTATTGAGGATGGGGGGTC CTAAATAAGGGGTGTGTTAA
Downstream 100 bases:
>100_bases ATGTTTCTAATTAGAGTTGCCTGGTTCACGTCATACCGGACTAGTCTACTATTGTATAGAATCATTCATTTAAATTATTC CGGAGCAAATACTGTAGCTC
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: LPS Biosynthesis Protein; Lipopolysaccharide N-Acetylglucosaminyltransferase; Group 1 Glycosyltransferase; Glycosyl Transferase Group 1 Protein
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MADRATIAVVTEPFKPFFGGAIRASRSIEAYRKSFDVLVYELIRTKSDPTYSRDRNVVKVYSGPVLRALYKLRLGFLPGL TPNGISKRMVRIGRDVSKTDVRAVVSLHEDLELLRLCSILREEYEARSAALLQLPVFIRDRRRQGEIIRAYDKWYSALYP GLVKELAGKVRTRVKLSVLSSRSVARLLRSYDLLISVSRSIGYEMGPEWESRIHALDPGVGLDEEDLGLIKTVKERAVKE DFIVFGGRIDALKGFIEGLEVFKAIARAYRDIKLVATGRVNPSLRERIVRYAKRIGLEDRLVLPGAVPRIERFRYVANAR LVIYPSHMDSYSYAVLEALHLGTPVVAYDIPALRFNYEGAEGLVLVREGDVEGLAAEALNILGSKDITVSPPRKVKKWDE IAREEVSLIERLVES
Sequences:
>Translated_415_residues MADRATIAVVTEPFKPFFGGAIRASRSIEAYRKSFDVLVYELIRTKSDPTYSRDRNVVKVYSGPVLRALYKLRLGFLPGL TPNGISKRMVRIGRDVSKTDVRAVVSLHEDLELLRLCSILREEYEARSAALLQLPVFIRDRRRQGEIIRAYDKWYSALYP GLVKELAGKVRTRVKLSVLSSRSVARLLRSYDLLISVSRSIGYEMGPEWESRIHALDPGVGLDEEDLGLIKTVKERAVKE DFIVFGGRIDALKGFIEGLEVFKAIARAYRDIKLVATGRVNPSLRERIVRYAKRIGLEDRLVLPGAVPRIERFRYVANAR LVIYPSHMDSYSYAVLEALHLGTPVVAYDIPALRFNYEGAEGLVLVREGDVEGLAAEALNILGSKDITVSPPRKVKKWDE IAREEVSLIERLVES >Mature_414_residues ADRATIAVVTEPFKPFFGGAIRASRSIEAYRKSFDVLVYELIRTKSDPTYSRDRNVVKVYSGPVLRALYKLRLGFLPGLT PNGISKRMVRIGRDVSKTDVRAVVSLHEDLELLRLCSILREEYEARSAALLQLPVFIRDRRRQGEIIRAYDKWYSALYPG LVKELAGKVRTRVKLSVLSSRSVARLLRSYDLLISVSRSIGYEMGPEWESRIHALDPGVGLDEEDLGLIKTVKERAVKED FIVFGGRIDALKGFIEGLEVFKAIARAYRDIKLVATGRVNPSLRERIVRYAKRIGLEDRLVLPGAVPRIERFRYVANARL VIYPSHMDSYSYAVLEALHLGTPVVAYDIPALRFNYEGAEGLVLVREGDVEGLAAEALNILGSKDITVSPPRKVKKWDEI AREEVSLIERLVES
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46862; Mature: 46731
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRATIAVVTEPFKPFFGGAIRASRSIEAYRKSFDVLVYELIRTKSDPTYSRDRNVVKV CCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE YSGPVLRALYKLRLGFLPGLTPNGISKRMVRIGRDVSKTDVRAVVSLHEDLELLRLCSIL CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH REEYEARSAALLQLPVFIRDRRRQGEIIRAYDKWYSALYPGLVKELAGKVRTRVKLSVLS HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRSVARLLRSYDLLISVSRSIGYEMGPEWESRIHALDPGVGLDEEDLGLIKTVKERAVKE HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHH DFIVFGGRIDALKGFIEGLEVFKAIARAYRDIKLVATGRVNPSLRERIVRYAKRIGLEDR HHEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCC LVLPGAVPRIERFRYVANARLVIYPSHMDSYSYAVLEALHLGTPVVAYDIPALRFNYEGA EECCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEECCCC EGLVLVREGDVEGLAAEALNILGSKDITVSPPRKVKKWDEIAREEVSLIERLVES CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ADRATIAVVTEPFKPFFGGAIRASRSIEAYRKSFDVLVYELIRTKSDPTYSRDRNVVKV CCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE YSGPVLRALYKLRLGFLPGLTPNGISKRMVRIGRDVSKTDVRAVVSLHEDLELLRLCSIL CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH REEYEARSAALLQLPVFIRDRRRQGEIIRAYDKWYSALYPGLVKELAGKVRTRVKLSVLS HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRSVARLLRSYDLLISVSRSIGYEMGPEWESRIHALDPGVGLDEEDLGLIKTVKERAVKE HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHH DFIVFGGRIDALKGFIEGLEVFKAIARAYRDIKLVATGRVNPSLRERIVRYAKRIGLEDR HHEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCC LVLPGAVPRIERFRYVANARLVIYPSHMDSYSYAVLEALHLGTPVVAYDIPALRFNYEGA EECCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEECCCC EGLVLVREGDVEGLAAEALNILGSKDITVSPPRKVKKWDEIAREEVSLIERLVES CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA