| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218883596
Identifier: 218883596
GI number: 218883596
Start: 263847
End: 265340
Strand: Reverse
Name: 218883596
Synonym: DKAM_0285
Alternate gene names: NA
Gene position: 265340-263847 (Counterclockwise)
Preceding gene: 218883603
Following gene: 218883592
Centisome position: 19.44
GC content: 44.44
Gene sequence:
>1494_bases GTGAGGGAAATGAATGGGTGGAGAACTGTTTTAGTTTCCATAATATTATCCCTTATCATAGCATATATTATCGGCTCACT ATACCCATTACCTATCGTTGGGCTAGGTCGGGGAAATCTCGTGTCAACCATCACTAAGACATCTACTAGAACCGTTACTG AGACAAGCACTGTGACCACCACTTTGACCAGCGAGATATATAGGACGACCACCGTAACCACCACCCTCTCAGAGACAATT ATGTCGAGCACCATGGTTACATTTACCTCTACAACAACAATTATTGAAGCACGTGAGTTAACCAGCCTGGAGCTGATTAT ACCGTCGTTCAGACTTGTTGATGAGGGAGGCGAGTTAATGCTTGCTGGACGTTACATAGTCCTGAGATATACTTCATGGA GGCCGGTGTTAATCATGGTGGATGCAGTAAATAATACCAACTATTTCTACCTCACGCCTTTCCAGATAACAGTGCCTGCT GTGTATGCTAAGCTCCTGGAGTATGATGGATTATACTATATGGAAATATATGATGTAGCCGAGATTACCGATATGATTTC ATCAAGGGGGCTGAGTAGGCCTATATTGTTATTCAAGGCTTTGAACGACTGGGCCTGTAATATTGCCTCATCCACCTCCA CGATCAATATCACTGACTGCAGGACTACATCTATTAAAGTGGGGGCAGGTACTGGGGCAACGATTATTGAGGCGGTGGTG AAATATGTGAATACATCATCAATACAGTACGTCTCTAGTCTCCTATACGGTGATAGCCAGCCACGAGACCTGGGGAATGC ATCCTGGAGACTGCTTCAATGGCTTGAAGAGAACACTTCATACGACTACGTTAAGGCGGACAGTAACTATAGCTACATAT ATGATCCAATAACCTTCGCTAACATAAGGAAGGGAATATGTACGGATTACGCATTGTTCACCGCTACAGCTCTCATTAAC CTGAGTAGTAGTGTGTACATACTCGTCTTCAACACCACCAAGGTGGGGCATGCAACAGCGGGCATTGTGATCGGTGGTGG ATTCTTTATATTGGACCAGGGGCTACCGCCTATCGAGTTAGAGGACTATTTCAGCAGCCTGGAATCCATAATAGGCGGTG TATTAGTCGGCGACGTATTCCTTCATGAAGTATGGATCGAAAACAACACTGTTAAACTATTGATGATCAGGACCTCCCTC GAAGACCTATTGAGGAAGTACCCTGATACAAATACGCTCGACGATGTCACGCCTGGTTTTATTAACGAGCTAATTAACGT GTTAAGGGAGAGATATAGGTATAATCCGGGAGCTAGACCCACTGGTTGCCTGGAATTCAATTGGGGTGGATTCAAGTATT ACAGTGATATATTCGCCCACGAATACGCTGTCTACGTGGCTGACAGGTTAACGGGTACGCTGGAAGCTAATATAGTTATA ACTGATGTAGATGTACCAAAATCGTACACTATACGTGTATGCTACCAGGGTTGA
Upstream 100 bases:
>100_bases TACTCACATATACCACCTACATGGTGTAGTAATAGGTATAAACAAAATATAAATTTTACCCACGTTATTAATACCATACA TTATTGGGGGAATGTGTTGA
Downstream 100 bases:
>100_bases ATACTGTGAACCATTCAAGCCAGTGTTTTATAGCTACCTAGTTTAGATAGTATTTTCCCAACTAGTTCACTGGGATTCCT AGCGAACACGTAGAGCCCCC
Product: putative calcium-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MREMNGWRTVLVSIILSLIIAYIIGSLYPLPIVGLGRGNLVSTITKTSTRTVTETSTVTTTLTSEIYRTTTVTTTLSETI MSSTMVTFTSTTTIIEARELTSLELIIPSFRLVDEGGELMLAGRYIVLRYTSWRPVLIMVDAVNNTNYFYLTPFQITVPA VYAKLLEYDGLYYMEIYDVAEITDMISSRGLSRPILLFKALNDWACNIASSTSTINITDCRTTSIKVGAGTGATIIEAVV KYVNTSSIQYVSSLLYGDSQPRDLGNASWRLLQWLEENTSYDYVKADSNYSYIYDPITFANIRKGICTDYALFTATALIN LSSSVYILVFNTTKVGHATAGIVIGGGFFILDQGLPPIELEDYFSSLESIIGGVLVGDVFLHEVWIENNTVKLLMIRTSL EDLLRKYPDTNTLDDVTPGFINELINVLRERYRYNPGARPTGCLEFNWGGFKYYSDIFAHEYAVYVADRLTGTLEANIVI TDVDVPKSYTIRVCYQG
Sequences:
>Translated_497_residues MREMNGWRTVLVSIILSLIIAYIIGSLYPLPIVGLGRGNLVSTITKTSTRTVTETSTVTTTLTSEIYRTTTVTTTLSETI MSSTMVTFTSTTTIIEARELTSLELIIPSFRLVDEGGELMLAGRYIVLRYTSWRPVLIMVDAVNNTNYFYLTPFQITVPA VYAKLLEYDGLYYMEIYDVAEITDMISSRGLSRPILLFKALNDWACNIASSTSTINITDCRTTSIKVGAGTGATIIEAVV KYVNTSSIQYVSSLLYGDSQPRDLGNASWRLLQWLEENTSYDYVKADSNYSYIYDPITFANIRKGICTDYALFTATALIN LSSSVYILVFNTTKVGHATAGIVIGGGFFILDQGLPPIELEDYFSSLESIIGGVLVGDVFLHEVWIENNTVKLLMIRTSL EDLLRKYPDTNTLDDVTPGFINELINVLRERYRYNPGARPTGCLEFNWGGFKYYSDIFAHEYAVYVADRLTGTLEANIVI TDVDVPKSYTIRVCYQG >Mature_497_residues MREMNGWRTVLVSIILSLIIAYIIGSLYPLPIVGLGRGNLVSTITKTSTRTVTETSTVTTTLTSEIYRTTTVTTTLSETI MSSTMVTFTSTTTIIEARELTSLELIIPSFRLVDEGGELMLAGRYIVLRYTSWRPVLIMVDAVNNTNYFYLTPFQITVPA VYAKLLEYDGLYYMEIYDVAEITDMISSRGLSRPILLFKALNDWACNIASSTSTINITDCRTTSIKVGAGTGATIIEAVV KYVNTSSIQYVSSLLYGDSQPRDLGNASWRLLQWLEENTSYDYVKADSNYSYIYDPITFANIRKGICTDYALFTATALIN LSSSVYILVFNTTKVGHATAGIVIGGGFFILDQGLPPIELEDYFSSLESIIGGVLVGDVFLHEVWIENNTVKLLMIRTSL EDLLRKYPDTNTLDDVTPGFINELINVLRERYRYNPGARPTGCLEFNWGGFKYYSDIFAHEYAVYVADRLTGTLEANIVI TDVDVPKSYTIRVCYQG
Specific function: Unknown
COG id: COG1800
COG function: function code R; Predicted transglutaminase-like proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0252 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007562 [H]
Pfam domain/function: PF04473 DUF553 [H]
EC number: NA
Molecular weight: Translated: 55475; Mature: 55475
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREMNGWRTVLVSIILSLIIAYIIGSLYPLPIVGLGRGNLVSTITKTSTRTVTETSTVTT CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHEECCCCEEEEECCEEEE TLTSEIYRTTTVTTTLSETIMSSTMVTFTSTTTIIEARELTSLELIIPSFRLVDEGGELM EHHHHHHEEEEEEHHHHHHHHHCEEEEEECCEEEEEHHCCCEEEEEECCEEEECCCCCEE LAGRYIVLRYTSWRPVLIMVDAVNNTNYFYLTPFQITVPAVYAKLLEYDGLYYMEIYDVA EECEEEEEEEECCCEEEEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCEEEEEEHHHH EITDMISSRGLSRPILLFKALNDWACNIASSTSTINITDCRTTSIKVGAGTGATIIEAVV HHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEEECEEEEEEEECCCCHHHHHHHH KYVNTSSIQYVSSLLYGDSQPRDLGNASWRLLQWLEENTSYDYVKADSNYSYIYDPITFA HHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEHH NIRKGICTDYALFTATALINLSSSVYILVFNTTKVGHATAGIVIGGGFFILDQGLPPIEL HHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCEEEEEEECEEEEEECCCCCCCH EDYFSSLESIIGGVLVGDVFLHEVWIENNTVKLLMIRTSLEDLLRKYPDTNTLDDVTPGF HHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCHHHHHHHCCCCCCCCCCCHHH INELINVLRERYRYNPGARPTGCLEFNWGGFKYYSDIFAHEYAVYVADRLTGTLEANIVI HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEHHCCCEEEEEEEE TDVDVPKSYTIRVCYQG EECCCCCCEEEEEEECC >Mature Secondary Structure MREMNGWRTVLVSIILSLIIAYIIGSLYPLPIVGLGRGNLVSTITKTSTRTVTETSTVTT CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHEECCCCEEEEECCEEEE TLTSEIYRTTTVTTTLSETIMSSTMVTFTSTTTIIEARELTSLELIIPSFRLVDEGGELM EHHHHHHEEEEEEHHHHHHHHHCEEEEEECCEEEEEHHCCCEEEEEECCEEEECCCCCEE LAGRYIVLRYTSWRPVLIMVDAVNNTNYFYLTPFQITVPAVYAKLLEYDGLYYMEIYDVA EECEEEEEEEECCCEEEEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCEEEEEEHHHH EITDMISSRGLSRPILLFKALNDWACNIASSTSTINITDCRTTSIKVGAGTGATIIEAVV HHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEEECEEEEEEEECCCCHHHHHHHH KYVNTSSIQYVSSLLYGDSQPRDLGNASWRLLQWLEENTSYDYVKADSNYSYIYDPITFA HHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEHH NIRKGICTDYALFTATALINLSSSVYILVFNTTKVGHATAGIVIGGGFFILDQGLPPIEL HHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCEEEEEEECEEEEEECCCCCCCH EDYFSSLESIIGGVLVGDVFLHEVWIENNTVKLLMIRTSLEDLLRKYPDTNTLDDVTPGF HHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCHHHHHHHCCCCCCCCCCCHHH INELINVLRERYRYNPGARPTGCLEFNWGGFKYYSDIFAHEYAVYVADRLTGTLEANIVI HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEHHCCCEEEEEEEE TDVDVPKSYTIRVCYQG EECCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]