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The map label for this gene is ydhC [H]

Identifier: 218532989

GI number: 218532989

Start: 5479923

End: 5480615

Strand: Reverse

Name: ydhC [H]

Synonym: Mchl_5113

Alternate gene names: 218532989

Gene position: 5480615-5479923 (Counterclockwise)

Preceding gene: 218532991

Following gene: 218532986

Centisome position: 94.85

GC content: 64.79

Gene sequence:

>693_bases
ATGAATAGAATTGAGCCCAGTATCGGGATCAGCCGTCGCTACCTTCATGACGAGGTGGCGGACCGGATGCGTGAACTGAT
CAACGAAGGCGAACTCGAGCCGCGTGCGCGCGTCAACGAGAGCGAGTTGACCGAACGGTTCGGAATTTCGCGCACGCCGC
TGCGCGAGGCGATCAAGATCCTGGCGACCGAAGGCCTTCTGGAGCTGCTGCCCAATCGCGGCGCCCGGGTCGCCAGCATC
TCGCCCGACGAACTGGAGGAGATGATCGAGGTCATCGCCGGGCTCGAAGCGACCGCCTGCGACCTCGCCTGCCGGACGAT
CACCGACGAGGAACTGGCGGAGATCGAGGCGAAGCATCAGGCGATGATGGCGGCGTGGCAGGCGCGCGACGAGACGAACT
ACTTCCGCCTAAATCGCGAAATCCACGAGGCGATCATGTTGGCGAGCCGCAACACCAAGTTGCGCAGCCTGTATCTGGGT
CTCACCGGCCGGATTCAGCGCTCCCGCTACAGCGCCCACCAGACCGAGGCGCAGTGGGCCCAGGCGGTCGAGGAGCACGA
GCGCATGATTCCGCTGCTCCGCGCCCGTCAGGGCGAGGAACTCGCCGGGCTGATGCGCCGGCATATCCGCTCGAAGAAGC
CGGTGATCGCAGCGATCTACGGCGAAGAGGGGACTGAGGCGTCGCCTCGTTAG

Upstream 100 bases:

>100_bases
GCTCACGAAGCTGGGAACGGCGCCGTATCTCGACAGGCGGTAGCCGCAAGTCTAGAAATTGCCACGCGTAGTTTCGCATT
TAAAATTCTTTGAGAGCTCG

Downstream 100 bases:

>100_bases
AGCGCTGTCCGACGAAGTGGACGCCGCAGGCTCAGCGTCCTTTGAAGCTCGGCGGGCGCTTGCCCAGGAAGGCTTCCATG
CCCTCCCGGAAGTCCTCGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNRIEPSIGISRRYLHDEVADRMRELINEGELEPRARVNESELTERFGISRTPLREAIKILATEGLLELLPNRGARVASI
SPDELEEMIEVIAGLEATACDLACRTITDEELAEIEAKHQAMMAAWQARDETNYFRLNREIHEAIMLASRNTKLRSLYLG
LTGRIQRSRYSAHQTEAQWAQAVEEHERMIPLLRARQGEELAGLMRRHIRSKKPVIAAIYGEEGTEASPR

Sequences:

>Translated_230_residues
MNRIEPSIGISRRYLHDEVADRMRELINEGELEPRARVNESELTERFGISRTPLREAIKILATEGLLELLPNRGARVASI
SPDELEEMIEVIAGLEATACDLACRTITDEELAEIEAKHQAMMAAWQARDETNYFRLNREIHEAIMLASRNTKLRSLYLG
LTGRIQRSRYSAHQTEAQWAQAVEEHERMIPLLRARQGEELAGLMRRHIRSKKPVIAAIYGEEGTEASPR
>Mature_230_residues
MNRIEPSIGISRRYLHDEVADRMRELINEGELEPRARVNESELTERFGISRTPLREAIKILATEGLLELLPNRGARVASI
SPDELEEMIEVIAGLEATACDLACRTITDEELAEIEAKHQAMMAAWQARDETNYFRLNREIHEAIMLASRNTKLRSLYLG
LTGRIQRSRYSAHQTEAQWAQAVEEHERMIPLLRARQGEELAGLMRRHIRSKKPVIAAIYGEEGTEASPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26239; Mature: 26239

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIEPSIGISRRYLHDEVADRMRELINEGELEPRARVNESELTERFGISRTPLREAIKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LATEGLLELLPNRGARVASISPDELEEMIEVIAGLEATACDLACRTITDEELAEIEAKHQ
HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
AMMAAWQARDETNYFRLNREIHEAIMLASRNTKLRSLYLGLTGRIQRSRYSAHQTEAQWA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAVEEHERMIPLLRARQGEELAGLMRRHIRSKKPVIAAIYGEEGTEASPR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNRIEPSIGISRRYLHDEVADRMRELINEGELEPRARVNESELTERFGISRTPLREAIKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
LATEGLLELLPNRGARVASISPDELEEMIEVIAGLEATACDLACRTITDEELAEIEAKHQ
HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
AMMAAWQARDETNYFRLNREIHEAIMLASRNTKLRSLYLGLTGRIQRSRYSAHQTEAQWA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAVEEHERMIPLLRARQGEELAGLMRRHIRSKKPVIAAIYGEEGTEASPR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]