| Definition | Methylobacterium chloromethanicum CM4, complete genome. |
|---|---|
| Accession | NC_011757 |
| Length | 5,777,908 |
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The map label for this gene is lgrB [H]
Identifier: 218532965
GI number: 218532965
Start: 5447542
End: 5450112
Strand: Reverse
Name: lgrB [H]
Synonym: Mchl_5089
Alternate gene names: 218532965
Gene position: 5450112-5447542 (Counterclockwise)
Preceding gene: 218532966
Following gene: 218532964
Centisome position: 94.33
GC content: 73.43
Gene sequence:
>2571_bases ATGCGGCATTTCACGCAGGAATCGCCGGCCATGACCGGCGAGGTTCACGGCGGCGACGCCTTCACAGCCCGCTGCTCCCA CAGCCAGACGCGGTTCTGGCTGCTCGACCAGTTGAGGCCCGGCGATCCGAGCCTGCACGTCGCCGCCCGCTGGCGCATCG CCGGACGGCTCGACGCCGAGATCCTCACCCGTGCCTTCCGCCTCCTGCTCGACCGGCACGAGGCTTTGCGCACGTCGATC GTCGGCGAGGGTGGCCGGCCGGTGCAGCGGATCGCCGGAACGGTGCCGCTGGCCTTCTCCGAAATCGACCTCTCCGGCCT GCCCGGCGACCGCCTCGGCGAGGCGCGCGCGATCGCCGAGTCGGAGGCCGGGAAGCCGTTCGATCTGGCCCGCGCGCCGC TCGTGCGGGTGACGCTGCTGCGGCTCGGGCGCGGCGATTCCCTGCTGCTCGTCACCGCCCATCACAGCATCTGCGACGGC TGGTCGATGGTGGTGCTGGCCCGCGAGTTCGTCGCGATTTACAGCGCCCTGATCCGGGGACAGGTACCGGCTCTGGCGCC TGCGGCCCTGCACTATGCCGACTTCGCGGAATGGGAGATCTCCCCGGCCCTCGCCGAGGCGGCGGAACGCGACCTCGCCT TCTGGGCGCGCTCGTTGCGCGATCTCATCCCGTTCGAGCTGCCGCCGGACCATCCCCGCCGCCCCGGCCGGGAGCGCCGC TTCGCCGCCGAGACCCGCCCGCTTTCCGCCGATCTCGGTGCGCGCATGGAAGCGTACGCGCGGGCGCAGGGTGCCACCCC CTTCGTCCTCGCCTGCACCATCCTGTTCGGGCTCCTGAGCGCGCGCACCGGGCGCGGCGACATCGCCGTCGGCACGCAAG TGCTGGGGCGCGACGAGATCGAGCTGGAAGGGGTCGTCGGCACCTTCGTGAACACGCTCGTGCTTCGGACTCATGTCGAG GCGGAGCAGAGCTTCGCCGAGCGGCTGGCGGCGACGCGCCGGACGATCCTCGACGCATGCGATCACGCGCTCGCTCCCTT CGACCGGGTGGTGCAGGCGCTGGCGCCCTGCCGCGACGGGCTGCGACCGCCGCTGGTGTCGGTCAACGTCCGGATGCGGC CGACACCCCAGGCGACGCCGTCGGGCGGGTCCTCAGTCGGGGAGCCGGCCCCGATCCGCCTCGTCGATCTCGACTACGCC CCCACCGGCAGCTTCTTCGACCTCGATCTCGAACTTGCGCCGGGCGAGGCCGGCTGGCGCCTGATCTGCGAGTACGATGC CGGCCTCTACGCGGCGGAGACCGTCGCCGGCCTGCTCGCCGATTTCGAGCAGGCCGCCCGCGCGGCGGTCGGGGCGCGGC TGCCCGATCCGGCCCCCCTGGGAAGCGGCGGGGGAGGGATCGCGGGCGCGCTTGAACAGGCATCCCGGGAAGCGGGACAG CCGGAGGCGGAGGAGACGGCCGCGCGGGCGACGCCGGACGCGGCACCTGCGCCCGAGACGGCTCCCCCGTTGGCGGGCGA GGCGGCGGGCGAACTTCTGCCGACGATACGCACGATCTGGCGGGAGATGCTCGGCCGCCCCGACCTGTCCGACGACGAGG ATTTCTTCGCGGCGGGCGGGCACTCGCTGCTGGCCGCCCGCGTCGTCGCGCGGATCGAGGCGGCGACGGGCCGAACCGTT CCGCTCTGGTCGTTCTTCGAGGCGGGCACGGTCGCGCGGCTCTGCGCCTTCCTCGGCGGCGAGGCGGCGGCGGGCGTGCG GCACCGCGCGCTTCAGGAGCCGACGGCGCAGGCGCGGCCCGGCTTCACCGCGATCCACCACGCTGCGGCCGATCAGGAAC TCTACCGGCCCCTATCCGAGGCCCTGGGGGCGGACCATCCCTTCGCGACGCTGCAACTGGAAAGCCGGGTTCCGCCCCAC GAGGAAACCCTGGAGCGGCTGGCCGGCGCCTATCGCGACGCGATCGAGGCCGCGCAGCCGCAGGGGCCGATCCGCCTCGT CGGGTTCTGCCGCTCGGGCGTCCTCGCCTTCGAGATCGCCCGGCAGTTCGCGCAGGGCGGCCGGGACGTCGCCCTCGTCG TCCTGATCGATTGCTGGGAGCCCGGCTATATCAGGCGCTTCAGGCCGCTCGCGCGCATGCGGGTGATGGCGGCCTACCGG CGCGGCCGGCTCGCCGCGCTCATCCGCCACGTCCGCCGCGACGGCATCGGCTACCTCGGCTCGCGGGCCCATCTCTGGTT CCGCTCGCATCGCGCCTGGCGCGGGTTGCGGCGTGCCCTGAACCGGGTGGGGCTCGCCACCCCGAGCCCGGAGGACGCGT TCTGGCAAGTGACCGACGAACTCGACGCGCTCGCCCTGGCCTACGAGCCGCGCCCCCATCCCGGGCCGGTGCTGATCGTC CGCAGCGAGAGTGTTCCGGTCGGCCCCGCGCTCGACCCGATGCTCGGCTGGCGGGCCCATGCCGAGAACATCGAGAGCGT GAGCGTTCCGGGCTTCGGCCACGAGGGCGCGTTCTCTCCCGCCGGCTGTCGGGTGATGGCCGCCAAGATCAGCCTGATGG CGTGCCGGTGA
Upstream 100 bases:
>100_bases GAACACCGGCCGCCGCGCGCGCGCCGATCCCGTCGATCCGGCGCCCAAGGACTGCCGACGCCGACCGCGCCGCGGTCGGT CAGGCGTGAGGGCGGGCGGG
Downstream 100 bases:
>100_bases TCCGATCTGCCGCACTTCGCCGCACACGCAGCGGGCGAGCCTAGATCCGCTTGCAATCCATTTTCGGCCGAGAGTAATTT AGGTTAATAAGCAGCGGGCG
Product: aspartate racemase
Products: pyrophosphate; AMP; enterobactin; pyrophosphate; L-Seryl-AMP [C]
Alternate protein names: ATP-dependent alanine adenylase; AlaA; Alanine activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing]; ATP-dependent alanine adenylase; AlaA; Alanine activase; ATP-dependent D-valine adenylase; D-ValA; D-valine activase; Valine racemase [ATP-hydrolyzing] [H]
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MRHFTQESPAMTGEVHGGDAFTARCSHSQTRFWLLDQLRPGDPSLHVAARWRIAGRLDAEILTRAFRLLLDRHEALRTSI VGEGGRPVQRIAGTVPLAFSEIDLSGLPGDRLGEARAIAESEAGKPFDLARAPLVRVTLLRLGRGDSLLLVTAHHSICDG WSMVVLAREFVAIYSALIRGQVPALAPAALHYADFAEWEISPALAEAAERDLAFWARSLRDLIPFELPPDHPRRPGRERR FAAETRPLSADLGARMEAYARAQGATPFVLACTILFGLLSARTGRGDIAVGTQVLGRDEIELEGVVGTFVNTLVLRTHVE AEQSFAERLAATRRTILDACDHALAPFDRVVQALAPCRDGLRPPLVSVNVRMRPTPQATPSGGSSVGEPAPIRLVDLDYA PTGSFFDLDLELAPGEAGWRLICEYDAGLYAAETVAGLLADFEQAARAAVGARLPDPAPLGSGGGGIAGALEQASREAGQ PEAEETAARATPDAAPAPETAPPLAGEAAGELLPTIRTIWREMLGRPDLSDDEDFFAAGGHSLLAARVVARIEAATGRTV PLWSFFEAGTVARLCAFLGGEAAAGVRHRALQEPTAQARPGFTAIHHAAADQELYRPLSEALGADHPFATLQLESRVPPH EETLERLAGAYRDAIEAAQPQGPIRLVGFCRSGVLAFEIARQFAQGGRDVALVVLIDCWEPGYIRRFRPLARMRVMAAYR RGRLAALIRHVRRDGIGYLGSRAHLWFRSHRAWRGLRRALNRVGLATPSPEDAFWQVTDELDALALAYEPRPHPGPVLIV RSESVPVGPALDPMLGWRAHAENIESVSVPGFGHEGAFSPAGCRVMAAKISLMACR
Sequences:
>Translated_856_residues MRHFTQESPAMTGEVHGGDAFTARCSHSQTRFWLLDQLRPGDPSLHVAARWRIAGRLDAEILTRAFRLLLDRHEALRTSI VGEGGRPVQRIAGTVPLAFSEIDLSGLPGDRLGEARAIAESEAGKPFDLARAPLVRVTLLRLGRGDSLLLVTAHHSICDG WSMVVLAREFVAIYSALIRGQVPALAPAALHYADFAEWEISPALAEAAERDLAFWARSLRDLIPFELPPDHPRRPGRERR FAAETRPLSADLGARMEAYARAQGATPFVLACTILFGLLSARTGRGDIAVGTQVLGRDEIELEGVVGTFVNTLVLRTHVE AEQSFAERLAATRRTILDACDHALAPFDRVVQALAPCRDGLRPPLVSVNVRMRPTPQATPSGGSSVGEPAPIRLVDLDYA PTGSFFDLDLELAPGEAGWRLICEYDAGLYAAETVAGLLADFEQAARAAVGARLPDPAPLGSGGGGIAGALEQASREAGQ PEAEETAARATPDAAPAPETAPPLAGEAAGELLPTIRTIWREMLGRPDLSDDEDFFAAGGHSLLAARVVARIEAATGRTV PLWSFFEAGTVARLCAFLGGEAAAGVRHRALQEPTAQARPGFTAIHHAAADQELYRPLSEALGADHPFATLQLESRVPPH EETLERLAGAYRDAIEAAQPQGPIRLVGFCRSGVLAFEIARQFAQGGRDVALVVLIDCWEPGYIRRFRPLARMRVMAAYR RGRLAALIRHVRRDGIGYLGSRAHLWFRSHRAWRGLRRALNRVGLATPSPEDAFWQVTDELDALALAYEPRPHPGPVLIV RSESVPVGPALDPMLGWRAHAENIESVSVPGFGHEGAFSPAGCRVMAAKISLMACR >Mature_856_residues MRHFTQESPAMTGEVHGGDAFTARCSHSQTRFWLLDQLRPGDPSLHVAARWRIAGRLDAEILTRAFRLLLDRHEALRTSI VGEGGRPVQRIAGTVPLAFSEIDLSGLPGDRLGEARAIAESEAGKPFDLARAPLVRVTLLRLGRGDSLLLVTAHHSICDG WSMVVLAREFVAIYSALIRGQVPALAPAALHYADFAEWEISPALAEAAERDLAFWARSLRDLIPFELPPDHPRRPGRERR FAAETRPLSADLGARMEAYARAQGATPFVLACTILFGLLSARTGRGDIAVGTQVLGRDEIELEGVVGTFVNTLVLRTHVE AEQSFAERLAATRRTILDACDHALAPFDRVVQALAPCRDGLRPPLVSVNVRMRPTPQATPSGGSSVGEPAPIRLVDLDYA PTGSFFDLDLELAPGEAGWRLICEYDAGLYAAETVAGLLADFEQAARAAVGARLPDPAPLGSGGGGIAGALEQASREAGQ PEAEETAARATPDAAPAPETAPPLAGEAAGELLPTIRTIWREMLGRPDLSDDEDFFAAGGHSLLAARVVARIEAATGRTV PLWSFFEAGTVARLCAFLGGEAAAGVRHRALQEPTAQARPGFTAIHHAAADQELYRPLSEALGADHPFATLQLESRVPPH EETLERLAGAYRDAIEAAQPQGPIRLVGFCRSGVLAFEIARQFAQGGRDVALVVLIDCWEPGYIRRFRPLARMRVMAAYR RGRLAALIRHVRRDGIGYLGSRAHLWFRSHRAWRGLRRALNRVGLATPSPEDAFWQVTDELDALALAYEPRPHPGPVLIV RSESVPVGPALDPMLGWRAHAENIESVSVPGFGHEGAFSPAGCRVMAAKISLMACR
Specific function: Activates the 3rd to 6th amino acids (Ala, D-Leu, Ala and D-Val) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 4th (D-Leu) and the 6th (D-Val) amino acids [H
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 4 acyl carrier domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 92346; Mature: 92346
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50075 ACP_DOMAIN ; PS00591 GLYCOSYL_HYDROL_F10
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHFTQESPAMTGEVHGGDAFTARCSHSQTRFWLLDQLRPGDPSLHVAARWRIAGRLDAE CCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHH ILTRAFRLLLDRHEALRTSIVGEGGRPVQRIAGTVPLAFSEIDLSGLPGDRLGEARAIAE HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHH SEAGKPFDLARAPLVRVTLLRLGRGDSLLLVTAHHSICDGWSMVVLAREFVAIYSALIRG HCCCCCHHHHHCHHHHHHHHHCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHC QVPALAPAALHYADFAEWEISPALAEAAERDLAFWARSLRDLIPFELPPDHPRRPGRERR CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH FAAETRPLSADLGARMEAYARAQGATPFVLACTILFGLLSARTGRGDIAVGTQVLGRDEI HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCE ELEGVVGTFVNTLVLRTHVEAEQSFAERLAATRRTILDACDHALAPFDRVVQALAPCRDG EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC LRPPLVSVNVRMRPTPQATPSGGSSVGEPAPIRLVDLDYAPTGSFFDLDLELAPGEAGWR CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCE LICEYDAGLYAAETVAGLLADFEQAARAAVGARLPDPAPLGSGGGGIAGALEQASREAGQ EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC PEAEETAARATPDAAPAPETAPPLAGEAAGELLPTIRTIWREMLGRPDLSDDEDFFAAGG CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC HSLLAARVVARIEAATGRTVPLWSFFEAGTVARLCAFLGGEAAAGVRHRALQEPTAQARP HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHCCC GFTAIHHAAADQELYRPLSEALGADHPFATLQLESRVPPHEETLERLAGAYRDAIEAAQP CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC QGPIRLVGFCRSGVLAFEIARQFAQGGRDVALVVLIDCWEPGYIRRFRPLARMRVMAAYR CCCEEEEEHHHCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH RGRLAALIRHVRRDGIGYLGSRAHLWFRSHRAWRGLRRALNRVGLATPSPEDAFWQVTDE CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHH LDALALAYEPRPHPGPVLIVRSESVPVGPALDPMLGWRAHAENIESVSVPGFGHEGAFSP HHHEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHCCHHHHCCCCEECCCCCCCCCCCCC AGCRVMAAKISLMACR CCCEEEEEHHHHHCCC >Mature Secondary Structure MRHFTQESPAMTGEVHGGDAFTARCSHSQTRFWLLDQLRPGDPSLHVAARWRIAGRLDAE CCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHH ILTRAFRLLLDRHEALRTSIVGEGGRPVQRIAGTVPLAFSEIDLSGLPGDRLGEARAIAE HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHH SEAGKPFDLARAPLVRVTLLRLGRGDSLLLVTAHHSICDGWSMVVLAREFVAIYSALIRG HCCCCCHHHHHCHHHHHHHHHCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHC QVPALAPAALHYADFAEWEISPALAEAAERDLAFWARSLRDLIPFELPPDHPRRPGRERR CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH FAAETRPLSADLGARMEAYARAQGATPFVLACTILFGLLSARTGRGDIAVGTQVLGRDEI HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCE ELEGVVGTFVNTLVLRTHVEAEQSFAERLAATRRTILDACDHALAPFDRVVQALAPCRDG EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC LRPPLVSVNVRMRPTPQATPSGGSSVGEPAPIRLVDLDYAPTGSFFDLDLELAPGEAGWR CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCE LICEYDAGLYAAETVAGLLADFEQAARAAVGARLPDPAPLGSGGGGIAGALEQASREAGQ EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC PEAEETAARATPDAAPAPETAPPLAGEAAGELLPTIRTIWREMLGRPDLSDDEDFFAAGG CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC HSLLAARVVARIEAATGRTVPLWSFFEAGTVARLCAFLGGEAAAGVRHRALQEPTAQARP HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHCCC GFTAIHHAAADQELYRPLSEALGADHPFATLQLESRVPPHEETLERLAGAYRDAIEAAQP CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC QGPIRLVGFCRSGVLAFEIARQFAQGGRDVALVVLIDCWEPGYIRRFRPLARMRVMAAYR CCCEEEEEHHHCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH RGRLAALIRHVRRDGIGYLGSRAHLWFRSHRAWRGLRRALNRVGLATPSPEDAFWQVTDE CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHH LDALALAYEPRPHPGPVLIVRSESVPVGPALDPMLGWRAHAENIESVSVPGFGHEGAFSP HHHEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHCCHHHHCCCCEECCCCCCCCCCCCC AGCRVMAAKISLMACR CCCEEEEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Phosphopantetheine. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 6 ATP; L-serine; 2,3-dihydroxybenzoate [C]
Specific reaction: 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Seryl-AMP 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Ser
General reaction: Transferases; Acyltransferases; Transferring groups other than amino-acyl groups [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA