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The map label for this gene is nudC [H]

Identifier: 218532788

GI number: 218532788

Start: 5233094

End: 5234053

Strand: Reverse

Name: nudC [H]

Synonym: Mchl_4911

Alternate gene names: 218532788

Gene position: 5234053-5233094 (Counterclockwise)

Preceding gene: 218532789

Following gene: 218532787

Centisome position: 90.59

GC content: 74.06

Gene sequence:

>960_bases
ATGACAGGCTCGCCCACCACGCCCGGCCGGGATGCCCTCGCCTATGCCGCGAGCCGCCTCGTGCGACACTCCGCCGAATT
CGGCCCGGCCCCCGCCCTGGCGGATGCCGGACCGGATGCCCGCCTCGTGCTGATGGCGGGCGAGACGGTGATCCTGCGCG
CCGCCCCGGCGGAAACCGGAACGGCCCTGCTCACGCCGGACGAGGCCGGCCGGGCGGGCGAGCGCGCCGTCGAAATCTAC
CTCGGTCGGGTCGAGGGGCGGCCGGTCTTCGCCGGCGCCGTCCCGGGGGAGGCGGCCCTCCTCTTCCCCGAGCCCGGTCA
CCGCGCCCTCGACCTGCGGGCGCTCGCGACCGAGGGCGCGGTGGCCCGCGAGGAGCAGGGGCTCATCGCCACCGCCAAAT
CGGTGCTGGCCTGGCACGCGCGGCACCGCTTCTGCGCCAATTGCGGCAGCCCGACCAGCATCGCCGCCGGCGGCTTCCGC
CGGGAATGCGAGGCGTGCGGGCTGCACCACTTCCCGCGCACCGATCCCGTAGCGATCATGCTCGTGCGGCGGGGCGACAC
CTGCTTGCTGGGGCGTGGACCGCATTTCAAGCCGGGGATGTATTCCTGCCTCGCCGGCTTCATCGAGCCCGGCGAGACGG
TCGAGAACGCCGTGCGCCGCGAGACCCGGGAGGAGACCGGCGTCGCGGTCGGCGCCGTCGCCTATCACGCCTCGCAGCCC
TGGCCGTTCCCGGCCTCGCTGATGATCGGCTGCGTGGCCGAGGCGCTGTCGGAGGCCATCCGCACCGATCCTGAGGAACT
GGAGGATGCGCGCTGGTTCTCGCGCGCCGAGGTGGCGCACATGATCGCCGGTACCCACCCCGAGGGCCTGACCGTGCCGC
CGGCCACCGCCATCGCCCACCTGCTGCTGCGCGACTGGCTGGACGGTGTCATTGGTCCTGCGCCGGGCTCGACGGCGTAA

Upstream 100 bases:

>100_bases
GTCTGGGGCGTCGGCGAGCGCAAGCCCTATCCGCCGCATGCCCGCGCCGCCCTGCTCGAACGGGCCGCCGCCCTGTTCAT
GGCCGCGTGAGGCGCCCCGG

Downstream 100 bases:

>100_bases
GGCGAGCGCGCTCGCGCTTCACGGACGCGAGCGGATGGTGTAGGCGCCCCCACTTGGCCGGGAAACCGGCCGAGGAATTG
GCCGGGGAAGTCGGGCCCTG

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTGSPTTPGRDALAYAASRLVRHSAEFGPAPALADAGPDARLVLMAGETVILRAAPAETGTALLTPDEAGRAGERAVEIY
LGRVEGRPVFAGAVPGEAALLFPEPGHRALDLRALATEGAVAREEQGLIATAKSVLAWHARHRFCANCGSPTSIAAGGFR
RECEACGLHHFPRTDPVAIMLVRRGDTCLLGRGPHFKPGMYSCLAGFIEPGETVENAVRRETREETGVAVGAVAYHASQP
WPFPASLMIGCVAEALSEAIRTDPEELEDARWFSRAEVAHMIAGTHPEGLTVPPATAIAHLLLRDWLDGVIGPAPGSTA

Sequences:

>Translated_319_residues
MTGSPTTPGRDALAYAASRLVRHSAEFGPAPALADAGPDARLVLMAGETVILRAAPAETGTALLTPDEAGRAGERAVEIY
LGRVEGRPVFAGAVPGEAALLFPEPGHRALDLRALATEGAVAREEQGLIATAKSVLAWHARHRFCANCGSPTSIAAGGFR
RECEACGLHHFPRTDPVAIMLVRRGDTCLLGRGPHFKPGMYSCLAGFIEPGETVENAVRRETREETGVAVGAVAYHASQP
WPFPASLMIGCVAEALSEAIRTDPEELEDARWFSRAEVAHMIAGTHPEGLTVPPATAIAHLLLRDWLDGVIGPAPGSTA
>Mature_318_residues
TGSPTTPGRDALAYAASRLVRHSAEFGPAPALADAGPDARLVLMAGETVILRAAPAETGTALLTPDEAGRAGERAVEIYL
GRVEGRPVFAGAVPGEAALLFPEPGHRALDLRALATEGAVAREEQGLIATAKSVLAWHARHRFCANCGSPTSIAAGGFRR
ECEACGLHHFPRTDPVAIMLVRRGDTCLLGRGPHFKPGMYSCLAGFIEPGETVENAVRRETREETGVAVGAVAYHASQPW
PFPASLMIGCVAEALSEAIRTDPEELEDARWFSRAEVAHMIAGTHPEGLTVPPATAIAHLLLRDWLDGVIGPAPGSTA

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=197, Percent_Identity=52.2842639593909, Blast_Score=217, Evalue=1e-56,
Organism=Homo sapiens, GI50593112, Length=195, Percent_Identity=42.0512820512821, Blast_Score=154, Evalue=1e-37,
Organism=Escherichia coli, GI48994995, Length=164, Percent_Identity=35.3658536585366, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71986510, Length=322, Percent_Identity=28.2608695652174, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI212645999, Length=324, Percent_Identity=28.0864197530864, Blast_Score=115, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321371, Length=258, Percent_Identity=31.0077519379845, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 33508; Mature: 33377

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSPTTPGRDALAYAASRLVRHSAEFGPAPALADAGPDARLVLMAGETVILRAAPAETG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCC
TALLTPDEAGRAGERAVEIYLGRVEGRPVFAGAVPGEAALLFPEPGHRALDLRALATEGA
CEEECCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEHHHHCCC
VAREEQGLIATAKSVLAWHARHRFCANCGSPTSIAAGGFRRECEACGLHHFPRTDPVAIM
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE
LVRRGDTCLLGRGPHFKPGMYSCLAGFIEPGETVENAVRRETREETGVAVGAVAYHASQP
EEECCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEHHEEECCCC
WPFPASLMIGCVAEALSEAIRTDPEELEDARWFSRAEVAHMIAGTHPEGLTVPPATAIAH
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LLLRDWLDGVIGPAPGSTA
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TGSPTTPGRDALAYAASRLVRHSAEFGPAPALADAGPDARLVLMAGETVILRAAPAETG
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCC
TALLTPDEAGRAGERAVEIYLGRVEGRPVFAGAVPGEAALLFPEPGHRALDLRALATEGA
CEEECCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEHHHHCCC
VAREEQGLIATAKSVLAWHARHRFCANCGSPTSIAAGGFRRECEACGLHHFPRTDPVAIM
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE
LVRRGDTCLLGRGPHFKPGMYSCLAGFIEPGETVENAVRRETREETGVAVGAVAYHASQP
EEECCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEHHEEECCCC
WPFPASLMIGCVAEALSEAIRTDPEELEDARWFSRAEVAHMIAGTHPEGLTVPPATAIAH
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LLLRDWLDGVIGPAPGSTA
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA