Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is 218710386
Identifier: 218710386
GI number: 218710386
Start: 2592917
End: 2593525
Strand: Reverse
Name: 218710386
Synonym: VS_2423
Alternate gene names: NA
Gene position: 2593525-2592917 (Counterclockwise)
Preceding gene: 218710388
Following gene: 218710384
Centisome position: 78.61
GC content: 43.35
Gene sequence:
>609_bases TTGTCATTTGGTTGGTTGCTATTATCCACCGCCATTTTTTGGCGGCCAAATTCAAATATCGAGATGAAAATGAAAAAAAC AATTTCAAAAGTTGTAGCACTAGCGGTGGTATCTGTTGCTTTATCTGGCTGTGTTGGTAGCAACGCAGTAACGGGTTACC TAATGAAGTTCAACCTTAAAGCCGTTGATAATCGTTACGCTCGTGGTGGTTTGAACATATTGCTTGCACCGGCTTACGGT CTAACAGTTGCAGCTGATTACTTGGTATTCAACTCACTAGAGTTCTGGACGGGCAGCAACCCACTAACAGGTGCACCGCA TATATTTGATACTAAGATTGATACTTACCTTGATATCAACCATCAGCTTGATAAGTCACTTACTGAAGCACCAGTAGGTC CTATTACGAGTGCTGATATGATTGAGAAAGGTCAAATGCAGCAGATCGACGAAAACACGATCCAAATGGATATCACTTAC CAGTCTGGTGAGCGTGCGACATTGATCGGAGTTCGTGATGGTGAGATGGTGACATATTTCATCGACGGCGAAGTAGTGGC ACAAACTTCAATTGACGAGTTAGAAAGCTACGCGGCTTCACGCGCTTAA
Upstream 100 bases:
>100_bases AAAATTTTTCTATGGAGTTGTCTATAAATAAGTTTCCAGTTTTAATTTGACTCATTATAGGGTGTTTCAAATTGTGGTTT TTCTGACAGTACACTGATAT
Downstream 100 bases:
>100_bases TTGTTTATTTAGTCACAAGTACATAGCTACAAAGATTGGATACAAAAACAGGTACTCATTGAGTACCTGTTTTATTTTGT GTCTATAAACGGTGTTTACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MSFGWLLLSTAIFWRPNSNIEMKMKKTISKVVALAVVSVALSGCVGSNAVTGYLMKFNLKAVDNRYARGGLNILLAPAYG LTVAADYLVFNSLEFWTGSNPLTGAPHIFDTKIDTYLDINHQLDKSLTEAPVGPITSADMIEKGQMQQIDENTIQMDITY QSGERATLIGVRDGEMVTYFIDGEVVAQTSIDELESYAASRA
Sequences:
>Translated_202_residues MSFGWLLLSTAIFWRPNSNIEMKMKKTISKVVALAVVSVALSGCVGSNAVTGYLMKFNLKAVDNRYARGGLNILLAPAYG LTVAADYLVFNSLEFWTGSNPLTGAPHIFDTKIDTYLDINHQLDKSLTEAPVGPITSADMIEKGQMQQIDENTIQMDITY QSGERATLIGVRDGEMVTYFIDGEVVAQTSIDELESYAASRA >Mature_201_residues SFGWLLLSTAIFWRPNSNIEMKMKKTISKVVALAVVSVALSGCVGSNAVTGYLMKFNLKAVDNRYARGGLNILLAPAYGL TVAADYLVFNSLEFWTGSNPLTGAPHIFDTKIDTYLDINHQLDKSLTEAPVGPITSADMIEKGQMQQIDENTIQMDITYQ SGERATLIGVRDGEMVTYFIDGEVVAQTSIDELESYAASRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22087; Mature: 21955
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFGWLLLSTAIFWRPNSNIEMKMKKTISKVVALAVVSVALSGCVGSNAVTGYLMKFNLK CCCHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE AVDNRYARGGLNILLAPAYGLTVAADYLVFNSLEFWTGSNPLTGAPHIFDTKIDTYLDIN HHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEECCCCEEEECC HQLDKSLTEAPVGPITSADMIEKGQMQQIDENTIQMDITYQSGERATLIGVRDGEMVTYF HHHHHHHHHCCCCCCCCHHHHCCCCHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEE IDGEVVAQTSIDELESYAASRA ECCEEEEECCHHHHHHHHHCCC >Mature Secondary Structure SFGWLLLSTAIFWRPNSNIEMKMKKTISKVVALAVVSVALSGCVGSNAVTGYLMKFNLK CCHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE AVDNRYARGGLNILLAPAYGLTVAADYLVFNSLEFWTGSNPLTGAPHIFDTKIDTYLDIN HHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEECCCCEEEECC HQLDKSLTEAPVGPITSADMIEKGQMQQIDENTIQMDITYQSGERATLIGVRDGEMVTYF HHHHHHHHHCCCCCCCCHHHHCCCCHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEE IDGEVVAQTSIDELESYAASRA ECCEEEEECCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA