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The map label for this gene is pomA [H]

Identifier: 218710366

GI number: 218710366

Start: 2573196

End: 2573960

Strand: Reverse

Name: pomA [H]

Synonym: VS_2403

Alternate gene names: 218710366

Gene position: 2573960-2573196 (Counterclockwise)

Preceding gene: 218710370

Following gene: 218710365

Centisome position: 78.02

GC content: 45.75

Gene sequence:

>765_bases
GTGGATTTAGCAACCCTAATAGGTTTGATTGGTGGATTTGCCTTCGTAATTATGGCAATGATCCTAGGTGGAAGCCTCGG
GATGTTCTATGACACGACATCCGTTTTGATCGTGATTGGTGGTTCAACGTTTGTTGTTCTAATGAAATTCACCATGGGAC
AGTTCTTTGGTGCGGCAAAAATTGCCGGTAAAGCATTTATGTTTAAAGCCGATGAGCCAGAAGATCTTATTGCTAAAGTC
GTAGAGATGGCGGATGCCGCGCGTAAAGGCGGTTTCTTAGCACTTGAAGAGATGGAAATCAGCAACAGTTTCATGCAAAA
GGGTATCGACCTATTGGTTGATGGCCATGATGGTGATGTAGTGCGTGCAGCACTGCAAAAAGACATCGCGTTAACCACAG
AACGTCACGAACAGGGCGCTAAAGTATTTACAGCTTTTGGTGATGTTGCACCCGCAATGGGTATGATTGGTACCTTGGTT
GGTTTGGTTGCCATGCTTTCGAACATGGATGATCCAAAAGCGATCGGGCCGGCGATGGCGGTTGCACTTTTAACCACTCT
ATATGGTGCAATTCTTTCGAACATGGTGTTCTTCCCTATCGCGGACAAACTTGCTCTACGTCGTGACCAAGAGACACTGA
ATCGTCGTTTGGTGATGGATGGCGTACTCGCGATTCAAGATGGTCAAAACCCACGAGTTATTGACGGTTACCTGAAGAGT
TACCTTAACGAAGGTAAACGTACGATTGATGGTGAAATGGCTTAA

Upstream 100 bases:

>100_bases
TGTGATACTTAGACGAAGAATTAACTAAAAGATCTTATAGTCTTGCCGATAAGAATATTATCGTCGACGTAGAACTGTAA
AAAAGCATGAGGAGTGCTCA

Downstream 100 bases:

>100_bases
GGGGAATAAAAATGGATGAAGAAAATCCATGTAAATGTCCCCCTCCGGGGTTGCCACAATGGATGGGAACATTTGCTGAC
TTGATGTCATTGTTGATGTG

Product: flagellar motor protein PomA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDLATLIGLIGGFAFVIMAMILGGSLGMFYDTTSVLIVIGGSTFVVLMKFTMGQFFGAAKIAGKAFMFKADEPEDLIAKV
VEMADAARKGGFLALEEMEISNSFMQKGIDLLVDGHDGDVVRAALQKDIALTTERHEQGAKVFTAFGDVAPAMGMIGTLV
GLVAMLSNMDDPKAIGPAMAVALLTTLYGAILSNMVFFPIADKLALRRDQETLNRRLVMDGVLAIQDGQNPRVIDGYLKS
YLNEGKRTIDGEMA

Sequences:

>Translated_254_residues
MDLATLIGLIGGFAFVIMAMILGGSLGMFYDTTSVLIVIGGSTFVVLMKFTMGQFFGAAKIAGKAFMFKADEPEDLIAKV
VEMADAARKGGFLALEEMEISNSFMQKGIDLLVDGHDGDVVRAALQKDIALTTERHEQGAKVFTAFGDVAPAMGMIGTLV
GLVAMLSNMDDPKAIGPAMAVALLTTLYGAILSNMVFFPIADKLALRRDQETLNRRLVMDGVLAIQDGQNPRVIDGYLKS
YLNEGKRTIDGEMA
>Mature_254_residues
MDLATLIGLIGGFAFVIMAMILGGSLGMFYDTTSVLIVIGGSTFVVLMKFTMGQFFGAAKIAGKAFMFKADEPEDLIAKV
VEMADAARKGGFLALEEMEISNSFMQKGIDLLVDGHDGDVVRAALQKDIALTTERHEQGAKVFTAFGDVAPAMGMIGTLV
GLVAMLSNMDDPKAIGPAMAVALLTTLYGAILSNMVFFPIADKLALRRDQETLNRRLVMDGVLAIQDGQNPRVIDGYLKS
YLNEGKRTIDGEMA

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 27187; Mature: 27187

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLATLIGLIGGFAFVIMAMILGGSLGMFYDTTSVLIVIGGSTFVVLMKFTMGQFFGAAK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHH
IAGKAFMFKADEPEDLIAKVVEMADAARKGGFLALEEMEISNSFMQKGIDLLVDGHDGDV
HHCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCEEEEECCCCHH
VRAALQKDIALTTERHEQGAKVFTAFGDVAPAMGMIGTLVGLVAMLSNMDDPKAIGPAMA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VALLTTLYGAILSNMVFFPIADKLALRRDQETLNRRLVMDGVLAIQDGQNPRVIDGYLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH
YLNEGKRTIDGEMA
HHHCCCCCCCCCCC
>Mature Secondary Structure
MDLATLIGLIGGFAFVIMAMILGGSLGMFYDTTSVLIVIGGSTFVVLMKFTMGQFFGAAK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHH
IAGKAFMFKADEPEDLIAKVVEMADAARKGGFLALEEMEISNSFMQKGIDLLVDGHDGDV
HHCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCEEEEECCCCHH
VRAALQKDIALTTERHEQGAKVFTAFGDVAPAMGMIGTLVGLVAMLSNMDDPKAIGPAMA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VALLTTLYGAILSNMVFFPIADKLALRRDQETLNRRLVMDGVLAIQDGQNPRVIDGYLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH
YLNEGKRTIDGEMA
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]