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The map label for this gene is skp [H]

Identifier: 218710309

GI number: 218710309

Start: 2511907

End: 2512416

Strand: Reverse

Name: skp [H]

Synonym: VS_2343

Alternate gene names: 218710309

Gene position: 2512416-2511907 (Counterclockwise)

Preceding gene: 218710310

Following gene: 218710308

Centisome position: 76.15

GC content: 39.8

Gene sequence:

>510_bases
TTGAAAAATATGATTAAAGCAGCAGGTTTAGGCCTTGTAGTTCTTAGCTCTTCTTTCTTTGCAACAGCGGCTGAAGCTGC
GCAAAAAGTGGGCTATGTAAATACTGCACAAGTATTCCAGGCTCTACCTCAGCGTGAAGTTGTTCTTCAAAAAATGCAGG
AAGAGTTCAAAGATAAAGCTGCTGAGCTTCAAAGTATCCAAGCTGAAGCTAAGACTAAGATTGAAAAGCTTAAGCGTGAT
GGTGAGCTATTAGGGCCTGATGAAGTAGAGAAGCTTCGTATTGAAGTCGGTCAACTAGACAGCAAATACAAAATCAAAGC
TCAAGCACTAGAAAAAGCAAGCCAACGTCGTGAAGCACAAGAGAAGCAGAAGCTATTCAAAGTAATTCAAGATGCTGTAA
CTAAAGTTGCAGAGAAAGAAGGCTATGACATGATCGTTGATATTCAAGCTCTGCAGTACGGCAAGCCAGAATACAACATC
TCTGAAAAAGTAATTAAATCACTGAAATAA

Upstream 100 bases:

>100_bases
TTTCTCTCTAGCGAAACCAATCAAAATCTACGAAGGCGATGACGAAGAATTCTTCACATTCACCATTGGTAGAACTTTCT
AATCTTTAAAGGACAATATT

Downstream 100 bases:

>100_bases
GTTTTATGAAGAATCTGACCTTAGCCGAATTGGCAACGATTACCGGTGGAGAGCTACACGGAGACGGTACAGTTACCGTT
TCAGCAGTCGCTCCTATGGA

Product: outer membrane protein OmpH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKNMIKAAGLGLVVLSSSFFATAAEAAQKVGYVNTAQVFQALPQREVVLQKMQEEFKDKAAELQSIQAEAKTKIEKLKRD
GELLGPDEVEKLRIEVGQLDSKYKIKAQALEKASQRREAQEKQKLFKVIQDAVTKVAEKEGYDMIVDIQALQYGKPEYNI
SEKVIKSLK

Sequences:

>Translated_169_residues
MKNMIKAAGLGLVVLSSSFFATAAEAAQKVGYVNTAQVFQALPQREVVLQKMQEEFKDKAAELQSIQAEAKTKIEKLKRD
GELLGPDEVEKLRIEVGQLDSKYKIKAQALEKASQRREAQEKQKLFKVIQDAVTKVAEKEGYDMIVDIQALQYGKPEYNI
SEKVIKSLK
>Mature_169_residues
MKNMIKAAGLGLVVLSSSFFATAAEAAQKVGYVNTAQVFQALPQREVVLQKMQEEFKDKAAELQSIQAEAKTKIEKLKRD
GELLGPDEVEKLRIEVGQLDSKYKIKAQALEKASQRREAQEKQKLFKVIQDAVTKVAEKEGYDMIVDIQALQYGKPEYNI
SEKVIKSLK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18961; Mature: 18961

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMIKAAGLGLVVLSSSFFATAAEAAQKVGYVNTAQVFQALPQREVVLQKMQEEFKDKA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
AELQSIQAEAKTKIEKLKRDGELLGPDEVEKLRIEVGQLDSKYKIKAQALEKASQRREAQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EKQKLFKVIQDAVTKVAEKEGYDMIVDIQALQYGKPEYNISEKVIKSLK
HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKNMIKAAGLGLVVLSSSFFATAAEAAQKVGYVNTAQVFQALPQREVVLQKMQEEFKDKA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
AELQSIQAEAKTKIEKLKRDGELLGPDEVEKLRIEVGQLDSKYKIKAQALEKASQRREAQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EKQKLFKVIQDAVTKVAEKEGYDMIVDIQALQYGKPEYNISEKVIKSLK
HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]