| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709371
Identifier: 218709371
GI number: 218709371
Start: 1492874
End: 1493767
Strand: Direct
Name: 218709371
Synonym: VS_1380
Alternate gene names: NA
Gene position: 1492874-1493767 (Clockwise)
Preceding gene: 218709370
Following gene: 218709372
Centisome position: 45.25
GC content: 46.76
Gene sequence:
>894_bases TTGGGTGTATTCCGTACCTGTGGCAGCATTCTCAGCAATGTTGTCACGCTTGGTGGTGCAAGCGAGTTAAAACACCAACG TGGTCTTTATGAACACGAGTATAAGTATTACCAGCATATTCACGGTTTAATCAGCGAACGTAAGCAGCAGATTGAATTTG ATTTATCTGCTCTTGGGCTGTCAATTATCGATGTACAGCTAGTCCTAGTGAGCGTTGAAAAAATACTCACAACTACATAC CAATTAAATGTCTTGCAGTTCAATAAGCCTGAATTGCTCGTGAATCAAATGAGTATGTTTCATTCCGGTTATTCGAGTGC GTTCAGCGCTGGGTTTGGCGGTGTACTCGGTGGCACCGCAGCTGTTGGAGCGTGGGGGCTAGTGTCTATTATCGGTAGTG CTTCAACCGGTACGGCAATCGCGACGCTTTCAGGTGCAGCTGCAACCAACGCCACATTGGCTTGGTTCGGTGGTGGGGCA TTGGCCGCTGGTGGCGCAGGAATGTCGGGTGGAATGATGGTATTAGGCGGTATCGTCGCCGCGCCAATGATCTTCTTCGC GACTAAAAAAGCATATCAAAAAGCAGAACAGCTCGAAAAAGCGACCCAAGATCTAAAAGACTCATTTCCTGAGTTAGAAC AACTTCTGATTTCAGCAAGCGAACAACAAGCGGAAGTTAAAGCGTATACCAAGCAAATGCGCACTATTTGCGACAATTAT GTTTTTGAAGCCAAAACCTTGATGACGATGATTCAGCCGAACGGCCGTTGGAGTCGTTTGTACCAGTGGTTACGCCGCCT GTTTAGGCTCAATGTGTTTAAGCCAAAGCAACAGCAAGCCATTGAATCATTAGCGGTCAAGACTAGCGAGCTTCTGGCAA ACTTTAACCGCTAA
Upstream 100 bases:
>100_bases ATTGAATTGGCAGAGCGAAAGCGCTGTCTAGACAATAAGTTAAATCACAAATAACCACTTCAACTAACTTACCTTATAAG TATTTTTAAGAGTCTATAAA
Downstream 100 bases:
>100_bases CATATTAATCTTTGGGCTCATTCTTGAGTGGAGCACCTCAAGCTGCTACCTCATAAAACTAAGAGTCGGGTGCTAAGTCA AAGACCTTATGGTTATGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGVFRTCGSILSNVVTLGGASELKHQRGLYEHEYKYYQHIHGLISERKQQIEFDLSALGLSIIDVQLVLVSVEKILTTTY QLNVLQFNKPELLVNQMSMFHSGYSSAFSAGFGGVLGGTAAVGAWGLVSIIGSASTGTAIATLSGAAATNATLAWFGGGA LAAGGAGMSGGMMVLGGIVAAPMIFFATKKAYQKAEQLEKATQDLKDSFPELEQLLISASEQQAEVKAYTKQMRTICDNY VFEAKTLMTMIQPNGRWSRLYQWLRRLFRLNVFKPKQQQAIESLAVKTSELLANFNR
Sequences:
>Translated_297_residues MGVFRTCGSILSNVVTLGGASELKHQRGLYEHEYKYYQHIHGLISERKQQIEFDLSALGLSIIDVQLVLVSVEKILTTTY QLNVLQFNKPELLVNQMSMFHSGYSSAFSAGFGGVLGGTAAVGAWGLVSIIGSASTGTAIATLSGAAATNATLAWFGGGA LAAGGAGMSGGMMVLGGIVAAPMIFFATKKAYQKAEQLEKATQDLKDSFPELEQLLISASEQQAEVKAYTKQMRTICDNY VFEAKTLMTMIQPNGRWSRLYQWLRRLFRLNVFKPKQQQAIESLAVKTSELLANFNR >Mature_296_residues GVFRTCGSILSNVVTLGGASELKHQRGLYEHEYKYYQHIHGLISERKQQIEFDLSALGLSIIDVQLVLVSVEKILTTTYQ LNVLQFNKPELLVNQMSMFHSGYSSAFSAGFGGVLGGTAAVGAWGLVSIIGSASTGTAIATLSGAAATNATLAWFGGGAL AAGGAGMSGGMMVLGGIVAAPMIFFATKKAYQKAEQLEKATQDLKDSFPELEQLLISASEQQAEVKAYTKQMRTICDNYV FEAKTLMTMIQPNGRWSRLYQWLRRLFRLNVFKPKQQQAIESLAVKTSELLANFNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32297; Mature: 32166
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFRTCGSILSNVVTLGGASELKHQRGLYEHEYKYYQHIHGLISERKQQIEFDLSALGL CCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIIDVQLVLVSVEKILTTTYQLNVLQFNKPELLVNQMSMFHSGYSSAFSAGFGGVLGGTA HHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH AVGAWGLVSIIGSASTGTAIATLSGAAATNATLAWFGGGALAAGGAGMSGGMMVLGGIVA HHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHH APMIFFATKKAYQKAEQLEKATQDLKDSFPELEQLLISASEQQAEVKAYTKQMRTICDNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFEAKTLMTMIQPNGRWSRLYQWLRRLFRLNVFKPKQQQAIESLAVKTSELLANFNR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GVFRTCGSILSNVVTLGGASELKHQRGLYEHEYKYYQHIHGLISERKQQIEFDLSALGL CHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIIDVQLVLVSVEKILTTTYQLNVLQFNKPELLVNQMSMFHSGYSSAFSAGFGGVLGGTA HHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH AVGAWGLVSIIGSASTGTAIATLSGAAATNATLAWFGGGALAAGGAGMSGGMMVLGGIVA HHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHH APMIFFATKKAYQKAEQLEKATQDLKDSFPELEQLLISASEQQAEVKAYTKQMRTICDNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFEAKTLMTMIQPNGRWSRLYQWLRRLFRLNVFKPKQQQAIESLAVKTSELLANFNR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA