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The map label for this gene is ydhC [H]

Identifier: 218709333

GI number: 218709333

Start: 1451661

End: 1452380

Strand: Direct

Name: ydhC [H]

Synonym: VS_1342

Alternate gene names: 218709333

Gene position: 1451661-1452380 (Clockwise)

Preceding gene: 218709332

Following gene: 218709334

Centisome position: 44.0

GC content: 45.83

Gene sequence:

>720_bases
ATGAATACTGCGATAAAAGATCTCACCTTAAGTGCAAACACGAAAATACGTGTGAGCGACAAAGAAAACACCAAGTCGGA
AAATTTGACTGAGTACCTCGTTGAGGCGATTGTTAACGGTGAATTAGCACCGGGCAGTAAGATCTCGGAGCCTGAACTGG
CTAAACGCTTCGAGGTAAGTCGAGGTCCATTACGTGAAGCGATAATGCGTGTGGAAGGGCTAGGGCTTATTGAGCGAATT
CCTCATGTCGGCGCACGAGTTATTACTTTTTCGGCAGACAAACTGCTAGAGCTTTACGCGGTGCGAGAGGCATTGGAAGG
CATGGCGGCTCGCTTAGCAGCGCGACACATCACACAAGAAGAGCTTATCGGGCTTGAAGGATTATTGTCGACACATTCAA
AACACATCGATGAAGTCGAAGGTTCTTCTTACTTTCATCAACATGGGGATTTCGATTTCCATTACCGCATTATCAAAGCG
AGTCGTAACAGCAAACTCATTTCGCTGCTGTGTGATGAGCTTTATCACCTATTACGCATGTACCGCTATCAATCGCCTAG
GGCTCAATCTCGACCAAAAGAGGCGCTCGATGAACACAAATACATCCTACAAGCGATTGGTAATCGCGATGAAGAGCTAG
CAGAAATGCTAATGCGACGACACATCTCGGGAAGCCGGTTGCTTATAGAACAACAAATTCAATCCAAAGATCTTGATTAA

Upstream 100 bases:

>100_bases
ACAATTTGCTTGATTGTCGACAATTTGATCGTGTATTTTATGTTCATGTTATGAAGTTGTTGACAGTTAGGGTCGGCAAT
CAGAAGTGAGCAGCGTGAAT

Downstream 100 bases:

>100_bases
CTGGCGACTGGTATTTGCCAGCGGTTCTTCGCTGGCGAGAGCTAAACATCAGTAGTCATAAAGATTAGAAATTAACAATT
AACAGGGAGCGTCATTATGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNTAIKDLTLSANTKIRVSDKENTKSENLTEYLVEAIVNGELAPGSKISEPELAKRFEVSRGPLREAIMRVEGLGLIERI
PHVGARVITFSADKLLELYAVREALEGMAARLAARHITQEELIGLEGLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKA
SRNSKLISLLCDELYHLLRMYRYQSPRAQSRPKEALDEHKYILQAIGNRDEELAEMLMRRHISGSRLLIEQQIQSKDLD

Sequences:

>Translated_239_residues
MNTAIKDLTLSANTKIRVSDKENTKSENLTEYLVEAIVNGELAPGSKISEPELAKRFEVSRGPLREAIMRVEGLGLIERI
PHVGARVITFSADKLLELYAVREALEGMAARLAARHITQEELIGLEGLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKA
SRNSKLISLLCDELYHLLRMYRYQSPRAQSRPKEALDEHKYILQAIGNRDEELAEMLMRRHISGSRLLIEQQIQSKDLD
>Mature_239_residues
MNTAIKDLTLSANTKIRVSDKENTKSENLTEYLVEAIVNGELAPGSKISEPELAKRFEVSRGPLREAIMRVEGLGLIERI
PHVGARVITFSADKLLELYAVREALEGMAARLAARHITQEELIGLEGLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKA
SRNSKLISLLCDELYHLLRMYRYQSPRAQSRPKEALDEHKYILQAIGNRDEELAEMLMRRHISGSRLLIEQQIQSKDLD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=186, Percent_Identity=30.6451612903226, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27247; Mature: 27247

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAIKDLTLSANTKIRVSDKENTKSENLTEYLVEAIVNGELAPGSKISEPELAKRFEVS
CCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
RGPLREAIMRVEGLGLIERIPHVGARVITFSADKLLELYAVREALEGMAARLAARHITQE
CCHHHHHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ELIGLEGLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNSKLISLLCDELYHLLRM
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
YRYQSPRAQSRPKEALDEHKYILQAIGNRDEELAEMLMRRHISGSRLLIEQQIQSKDLD
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTAIKDLTLSANTKIRVSDKENTKSENLTEYLVEAIVNGELAPGSKISEPELAKRFEVS
CCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
RGPLREAIMRVEGLGLIERIPHVGARVITFSADKLLELYAVREALEGMAARLAARHITQE
CCHHHHHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ELIGLEGLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNSKLISLLCDELYHLLRM
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
YRYQSPRAQSRPKEALDEHKYILQAIGNRDEELAEMLMRRHISGSRLLIEQQIQSKDLD
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]