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The map label for this gene is ydaM [H]

Identifier: 218709188

GI number: 218709188

Start: 1266910

End: 1268202

Strand: Direct

Name: ydaM [H]

Synonym: VS_1195

Alternate gene names: 218709188

Gene position: 1266910-1268202 (Clockwise)

Preceding gene: 218709187

Following gene: 218709190

Centisome position: 38.4

GC content: 44.01

Gene sequence:

>1293_bases
ATGCTTCGGCTTATGAAGTGTAGCGATAATGCGGAGTTGGCAATGTCTTCAATAAATTTCGAATCCACGTACGGTGTAAT
AACGATTCAAGATATGAATGTAGTGAGTGTTGACGCTAACTATGCTCGCATCTATGGATACCAATCACCGGAAGAACTAC
TTTCTGATATCGATAGCTTTCTAGATCTCATCTCAGAAGAGTACCATGTTTTAGCCTATCAAAATTACCTTGAAACGGTC
AGTGGTCAACGAGACCCTCAGGTTCACACCTATACCAATATTGATCGCAACGGCAGAGAGTTCACCGTGTTTTCTATCGA
TCATGTGACGGAGTGGCAGGGAAGACCTGCACTGCAAGTCACGGTTATCGATCTTTCCCCTGCGATTCAGCTGCAAAATG
CAGTGCGTGAGCAAGATAAGATGTATCACGACATGATCATGCAATCAGGGCAGGGCATCTTGGTTCACCGAGATTTCAAA
CCGTTGATGGTCAATCAATCCTGGGTAAAACTGCAAGGTGGATCTTCCATAGAGCAAGTCTTAGCGCTGGATTCGATTCT
TGACTTAGTACCACAGCAGAATAGCGACGGCATCTATAAACACTATCAAGCGATCGTGTCGGGTGAGTTGTCGGGAACCA
GTACCGTGGTTGAAAATATTGGCTTTGACGGTGTTCATCGCTTCTTTAATATTTACGATAATGCAATTACTTGGAAAGGT
CAGCGGGCCGTTCAAGTAGTACTCGAAGATGTGACTCAAAAGGTGATGTTGGAGAAGCAGTTGGTTCACCAAGCGAATTA
CGATGAAATGACGGATCTGCTTAATCGTAGGGCAATTTATGAATGGTTGAGAGAGCACATGTTCTCTAAAAACTACCTTG
TCTGTATGCTATTAGATATCGATGACTTCAAGTCGATTAATGACACTTATGGTCATATGGTAGGTGATGAGGTAATTTGT
GCTTTGGCTAGTATAACCAAGCGCAATGCCGAGAAAGTTGGTGGAGTAGCAGGCCGTTGGGGTGGTGAAGAGTTCATTAT
ATTTATCCCGAATACGCCTCTTGAAACAGCTCTCGAAGTTTCAGAAGAGATTCGCCAACAGTTCAATCAAGTCGAGTTCA
AAGTGGGTGAACAAATTCGTTTTAACTCTAGCGTGAGTATCGGAATCAGCGATAGCCGAGCGTGTGAAGACGGTGTCACT
ATTGACGCACTCGTGAATTTAACCGACCAATCTCTCTATCGCGCTAAAGCCAATGGCAAGAATTGTGTAGACGGAGATGT
AGTCGCGCTTTAA

Upstream 100 bases:

>100_bases
GAGTTGTAGAGAAGCCTAAAGCAGTACGATATACTAGATATCATATTAATGTCCCTAACGCGTGATAGATTGTGTGGAAG
CGTTGGCAGGATGTGTTGTT

Downstream 100 bases:

>100_bases
CGCCTAAAACCGTCATCGAAAGCGAATAGAATCGACAACAAAAAATGCCCTCAAGTCATCACTTGAGGGCATTTTAGTTT
TTGGCTATTAACTTAACGCT

Product: sensory transduction/ GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MLRLMKCSDNAELAMSSINFESTYGVITIQDMNVVSVDANYARIYGYQSPEELLSDIDSFLDLISEEYHVLAYQNYLETV
SGQRDPQVHTYTNIDRNGREFTVFSIDHVTEWQGRPALQVTVIDLSPAIQLQNAVREQDKMYHDMIMQSGQGILVHRDFK
PLMVNQSWVKLQGGSSIEQVLALDSILDLVPQQNSDGIYKHYQAIVSGELSGTSTVVENIGFDGVHRFFNIYDNAITWKG
QRAVQVVLEDVTQKVMLEKQLVHQANYDEMTDLLNRRAIYEWLREHMFSKNYLVCMLLDIDDFKSINDTYGHMVGDEVIC
ALASITKRNAEKVGGVAGRWGGEEFIIFIPNTPLETALEVSEEIRQQFNQVEFKVGEQIRFNSSVSIGISDSRACEDGVT
IDALVNLTDQSLYRAKANGKNCVDGDVVAL

Sequences:

>Translated_430_residues
MLRLMKCSDNAELAMSSINFESTYGVITIQDMNVVSVDANYARIYGYQSPEELLSDIDSFLDLISEEYHVLAYQNYLETV
SGQRDPQVHTYTNIDRNGREFTVFSIDHVTEWQGRPALQVTVIDLSPAIQLQNAVREQDKMYHDMIMQSGQGILVHRDFK
PLMVNQSWVKLQGGSSIEQVLALDSILDLVPQQNSDGIYKHYQAIVSGELSGTSTVVENIGFDGVHRFFNIYDNAITWKG
QRAVQVVLEDVTQKVMLEKQLVHQANYDEMTDLLNRRAIYEWLREHMFSKNYLVCMLLDIDDFKSINDTYGHMVGDEVIC
ALASITKRNAEKVGGVAGRWGGEEFIIFIPNTPLETALEVSEEIRQQFNQVEFKVGEQIRFNSSVSIGISDSRACEDGVT
IDALVNLTDQSLYRAKANGKNCVDGDVVAL
>Mature_430_residues
MLRLMKCSDNAELAMSSINFESTYGVITIQDMNVVSVDANYARIYGYQSPEELLSDIDSFLDLISEEYHVLAYQNYLETV
SGQRDPQVHTYTNIDRNGREFTVFSIDHVTEWQGRPALQVTVIDLSPAIQLQNAVREQDKMYHDMIMQSGQGILVHRDFK
PLMVNQSWVKLQGGSSIEQVLALDSILDLVPQQNSDGIYKHYQAIVSGELSGTSTVVENIGFDGVHRFFNIYDNAITWKG
QRAVQVVLEDVTQKVMLEKQLVHQANYDEMTDLLNRRAIYEWLREHMFSKNYLVCMLLDIDDFKSINDTYGHMVGDEVIC
ALASITKRNAEKVGGVAGRWGGEEFIIFIPNTPLETALEVSEEIRQQFNQVEFKVGEQIRFNSSVSIGISDSRACEDGVT
IDALVNLTDQSLYRAKANGKNCVDGDVVAL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=205, Percent_Identity=40.4878048780488, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=34.7593582887701, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=36.2573099415205, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=34.7826086956522, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=30.8108108108108, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787262, Length=203, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=31.4917127071823, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=33.1288343558282, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788381, Length=151, Percent_Identity=29.8013245033113, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48570; Mature: 48570

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLMKCSDNAELAMSSINFESTYGVITIQDMNVVSVDANYARIYGYQSPEELLSDIDSF
CEEEEECCCCCCEEEEECCCCCCEEEEEEECCEEEEECCCEEEEECCCCHHHHHHHHHHH
LDLISEEYHVLAYQNYLETVSGQRDPQVHTYTNIDRNGREFTVFSIDHVTEWQGRPALQV
HHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEE
TVIDLSPAIQLQNAVREQDKMYHDMIMQSGQGILVHRDFKPLMVNQSWVKLQGGSSIEQV
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCEEEEECCCHHHHH
LALDSILDLVPQQNSDGIYKHYQAIVSGELSGTSTVVENIGFDGVHRFFNIYDNAITWKG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEECC
QRAVQVVLEDVTQKVMLEKQLVHQANYDEMTDLLNRRAIYEWLREHMFSKNYLVCMLLDI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
DDFKSINDTYGHMVGDEVICALASITKRNAEKVGGVAGRWGGEEFIIFIPNTPLETALEV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
SEEIRQQFNQVEFKVGEQIRFNSSVSIGISDSRACEDGVTIDALVNLTDQSLYRAKANGK
HHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCCCCCEEEHEEECCHHHHHHHHCCCC
NCVDGDVVAL
CCCCCCEEEC
>Mature Secondary Structure
MLRLMKCSDNAELAMSSINFESTYGVITIQDMNVVSVDANYARIYGYQSPEELLSDIDSF
CEEEEECCCCCCEEEEECCCCCCEEEEEEECCEEEEECCCEEEEECCCCHHHHHHHHHHH
LDLISEEYHVLAYQNYLETVSGQRDPQVHTYTNIDRNGREFTVFSIDHVTEWQGRPALQV
HHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEE
TVIDLSPAIQLQNAVREQDKMYHDMIMQSGQGILVHRDFKPLMVNQSWVKLQGGSSIEQV
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCEEEEECCCHHHHH
LALDSILDLVPQQNSDGIYKHYQAIVSGELSGTSTVVENIGFDGVHRFFNIYDNAITWKG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEECC
QRAVQVVLEDVTQKVMLEKQLVHQANYDEMTDLLNRRAIYEWLREHMFSKNYLVCMLLDI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
DDFKSINDTYGHMVGDEVICALASITKRNAEKVGGVAGRWGGEEFIIFIPNTPLETALEV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
SEEIRQQFNQVEFKVGEQIRFNSSVSIGISDSRACEDGVTIDALVNLTDQSLYRAKANGK
HHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCCCCCEEEHEEECCHHHHHHHHCCCC
NCVDGDVVAL
CCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]