Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is 218708791
Identifier: 218708791
GI number: 218708791
Start: 811593
End: 812834
Strand: Direct
Name: 218708791
Synonym: VS_0790
Alternate gene names: NA
Gene position: 811593-812834 (Clockwise)
Preceding gene: 218708790
Following gene: 218708794
Centisome position: 24.6
GC content: 44.61
Gene sequence:
>1242_bases ATGAAAAAACTGTCAACTCAAGTAGTGATCATCGGAGCTGGCCCATCAGGGTCTATTGCGGCGTCTTTGCTTCATAAAAA AGGCATCGATGTTCGAGTGATTGAAAAAAGCCTTTTCCCCCGTTTTTCTATTGGTGAAAGCCTGTTACCAGCGTGCATGG AAGTGATCGAACAAGCGGGCATGAGCGAAGCTGTGGCTAATGCTAACTTCCAATTTAAAGATGGCGCGGCTTTTCGTAAA AATGGTGTTTATACGGTGTTTAATTTTGAAGATAAGTTCTCTTCTGGGCCGGGAACGACGTTTCAGGTTCAACGAGGTAC TTTTGATAAGGTAATGGCAGACTGTGCTGAAGCGCAGGGTGTTACCATTGATTACCAACATGAACTGATAGGCATTAACT TCGCTGAAGACCGTACTATATTAGATGTACAAATACAGGGTGGAGAGCGTTATCAGCTAGAGGCTCAATACGTCCTTGAT GGTAGTGGTTTTGGTCGAGTGTTACCCAAGATGCTCGATTTAGAAGAGCCATCACGACTTCCTCCGCGCAAAGCTATCTT CACACATATTAATGATCATATCTCAGCAACGGATACTGATCTTGAATACGATCGCAGTAAAATTTTGGTCTCGGTACATC CAACCAATCCTGATGTTTGGTATTGGTTGATTCCCTTCAGTAACGGAGTCTCTTCATTCGGTGTGGTAGGGGAACCTAAA TTCTTTGAATCATACCCAGAAGACAAGATTTCGGCGATTAAGCAGCTGGCAACAGAAGAGTCGGGCTTGGCCGAGATTTT GGCAAATGCGGAGTATCCAAATCCCGCAGGCGAAATTGGTGGCTATTCTGTCAACGTTAAACATCTTGCAACCGATAAGT ATGCATTACTGGGTAATGCAGGGGAATTTCTTGACCCTGTATTTTCATCGGGAGTGACTATTGCGATGAAGTCGGCTCAG TTTGTGGTTGAGTGTGTGGAAAAACAACTCAATGGCGAGAAAGTCGACTGGGATCGTGAATACGCTGAACCATTGATGAT TGGGGTAAATACTTTTAGAACGTATGTTGAAGGGTGGTACTCGGGGGCTCTTCAGGATGTGATTTTCTATCAAGAACCAA ACCCGAAGATAAAGCAAATGGTATGTTCGATTTTGGCGGGCTACGCATGGGATCAAAGCAACCCCTATGTAAACGAGTCA AAACGTCGATTGAAGACGCTGGCAGAGATATGCCGAAGCTAG
Upstream 100 bases:
>100_bases CTTTGATGTGGTGACTCGTACCGACGATATCGGTCTTGGGCATACGCTTCTGGAGCTGAAAGCTAGCGCGAAATAATCAT GGTAAACATGGCTTAAATTA
Downstream 100 bases:
>100_bases ATGGTCTATTTAGTATAAAATAGAATGCTAAATGGTCACTATGGTTAGCCATAAATCAAAACAGCCGCAATGCGCGGCTG TTTTTGTATCTGATAATCAG
Product: dehydrogenase
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Oxidoreductase Protein; Oxidoreductase; Dehydrogenase; Halogenase; Geranylgeranyl Reductase; FADH2 Dependent Halogenase; Pyridine Nucleotide-Disulfide Oxidoreductase; Alkylhalidase PltA; Dehyrogenase; Oxidoreductase Transmembrane Protein; LOW QUALITY PROTEIN Dehydrogenase; Monooxygenase; Dehydrogenases; Halogenase Protein; Flavoprotein/Dehydrogenase; Dehydrogenase/Oxidoreductase; FAD Oxidoreductase; Hydroxylase; Electron Transfer Oxidoreductase; Alkylhalidase CmlS; Alkylhalidase; LOW QUALITY PROTEIN Oxidoreductase
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MKKLSTQVVIIGAGPSGSIAASLLHKKGIDVRVIEKSLFPRFSIGESLLPACMEVIEQAGMSEAVANANFQFKDGAAFRK NGVYTVFNFEDKFSSGPGTTFQVQRGTFDKVMADCAEAQGVTIDYQHELIGINFAEDRTILDVQIQGGERYQLEAQYVLD GSGFGRVLPKMLDLEEPSRLPPRKAIFTHINDHISATDTDLEYDRSKILVSVHPTNPDVWYWLIPFSNGVSSFGVVGEPK FFESYPEDKISAIKQLATEESGLAEILANAEYPNPAGEIGGYSVNVKHLATDKYALLGNAGEFLDPVFSSGVTIAMKSAQ FVVECVEKQLNGEKVDWDREYAEPLMIGVNTFRTYVEGWYSGALQDVIFYQEPNPKIKQMVCSILAGYAWDQSNPYVNES KRRLKTLAEICRS
Sequences:
>Translated_413_residues MKKLSTQVVIIGAGPSGSIAASLLHKKGIDVRVIEKSLFPRFSIGESLLPACMEVIEQAGMSEAVANANFQFKDGAAFRK NGVYTVFNFEDKFSSGPGTTFQVQRGTFDKVMADCAEAQGVTIDYQHELIGINFAEDRTILDVQIQGGERYQLEAQYVLD GSGFGRVLPKMLDLEEPSRLPPRKAIFTHINDHISATDTDLEYDRSKILVSVHPTNPDVWYWLIPFSNGVSSFGVVGEPK FFESYPEDKISAIKQLATEESGLAEILANAEYPNPAGEIGGYSVNVKHLATDKYALLGNAGEFLDPVFSSGVTIAMKSAQ FVVECVEKQLNGEKVDWDREYAEPLMIGVNTFRTYVEGWYSGALQDVIFYQEPNPKIKQMVCSILAGYAWDQSNPYVNES KRRLKTLAEICRS >Mature_413_residues MKKLSTQVVIIGAGPSGSIAASLLHKKGIDVRVIEKSLFPRFSIGESLLPACMEVIEQAGMSEAVANANFQFKDGAAFRK NGVYTVFNFEDKFSSGPGTTFQVQRGTFDKVMADCAEAQGVTIDYQHELIGINFAEDRTILDVQIQGGERYQLEAQYVLD GSGFGRVLPKMLDLEEPSRLPPRKAIFTHINDHISATDTDLEYDRSKILVSVHPTNPDVWYWLIPFSNGVSSFGVVGEPK FFESYPEDKISAIKQLATEESGLAEILANAEYPNPAGEIGGYSVNVKHLATDKYALLGNAGEFLDPVFSSGVTIAMKSAQ FVVECVEKQLNGEKVDWDREYAEPLMIGVNTFRTYVEGWYSGALQDVIFYQEPNPKIKQMVCSILAGYAWDQSNPYVNES KRRLKTLAEICRS
Specific function: Unknown
COG id: COG0644
COG function: function code C; Dehydrogenases (flavoproteins)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45738; Mature: 45738
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLSTQVVIIGAGPSGSIAASLLHKKGIDVRVIEKSLFPRFSIGESLLPACMEVIEQAG CCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHCC MSEAVANANFQFKDGAAFRKNGVYTVFNFEDKFSSGPGTTFQVQRGTFDKVMADCAEAQG CHHHHHCCCEEECCCCCCCCCCEEEEEECHHCCCCCCCCEEEEECCCHHHHHHHHHHHCC VTIDYQHELIGINFAEDRTILDVQIQGGERYQLEAQYVLDGSGFGRVLPKMLDLEEPSRL CEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCC PPRKAIFTHINDHISATDTDLEYDRSKILVSVHPTNPDVWYWLIPFSNGVSSFGVVGEPK CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCH FFESYPEDKISAIKQLATEESGLAEILANAEYPNPAGEIGGYSVNVKHLATDKYALLGNA HHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHCCCEEEEEEEECCCCEEEECCC GEFLDPVFSSGVTIAMKSAQFVVECVEKQLNGEKVDWDREYAEPLMIGVNTFRTYVEGWY HHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEHHHHHHHHHHHHH SGALQDVIFYQEPNPKIKQMVCSILAGYAWDQSNPYVNESKRRLKTLAEICRS HHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKKLSTQVVIIGAGPSGSIAASLLHKKGIDVRVIEKSLFPRFSIGESLLPACMEVIEQAG CCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHCC MSEAVANANFQFKDGAAFRKNGVYTVFNFEDKFSSGPGTTFQVQRGTFDKVMADCAEAQG CHHHHHCCCEEECCCCCCCCCCEEEEEECHHCCCCCCCCEEEEECCCHHHHHHHHHHHCC VTIDYQHELIGINFAEDRTILDVQIQGGERYQLEAQYVLDGSGFGRVLPKMLDLEEPSRL CEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCC PPRKAIFTHINDHISATDTDLEYDRSKILVSVHPTNPDVWYWLIPFSNGVSSFGVVGEPK CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCH FFESYPEDKISAIKQLATEESGLAEILANAEYPNPAGEIGGYSVNVKHLATDKYALLGNA HHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHCCCEEEEEEEECCCCEEEECCC GEFLDPVFSSGVTIAMKSAQFVVECVEKQLNGEKVDWDREYAEPLMIGVNTFRTYVEGWY HHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEHHHHHHHHHHHHH SGALQDVIFYQEPNPKIKQMVCSILAGYAWDQSNPYVNESKRRLKTLAEICRS HHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA