Click here to switch to the map view.

The map label for this gene is ydaL [H]

Identifier: 218708763

GI number: 218708763

Start: 781617

End: 782198

Strand: Reverse

Name: ydaL [H]

Synonym: VS_0760

Alternate gene names: 218708763

Gene position: 782198-781617 (Counterclockwise)

Preceding gene: 218708764

Following gene: 218708762

Centisome position: 23.71

GC content: 44.16

Gene sequence:

>582_bases
ATGTCTCATGATGACGACTTAGATCTATTCCAAGAAATGATGGGCGATGTTAAACGTATCGACCATGACACCGCCGAACA
CCAGAAAGTACACCGAGTCACAGAATCTCACCTTGCTAAACGTGAAGCCGCTATGTGGCTGTCTGACGACGAGAAAGACT
ACTTATCATTAGACTACTCTCCAATGATCAAACCTGACGATGTCATTGCTTATAAAAAAGATGGCGTACAAGAAGGCGTA
TACAAAAAGCTGCGCTTGGGCAAGTATCCAATTCAAGCCAAACTCGACCTTCACAGGAAAACACTGAAAGACGCTCGTAA
CGAAGTACTCTCATTTTTACGCCAGTGTTTAAGAATGGATGTTCGCACCGTTATCATTGTCCACGGTAAAGGTGAGCGTT
CGAATCCACCAGCAATGATGAAAAGCTACGTGGCAAATTGGCTAACACAAATTAACGATGTTCAATGTGTTCATTCAGCT
CCGCAATTTCACGGTGGTACAGGTGCGGTCTATGTCATGCTCAGAAAGAGTAATGACAAAAAGCTAGAGAACAGAGAGCG
CCATCAAAAGCGCAGCAGTTGA

Upstream 100 bases:

>100_bases
ACCGGAGCCGACTTATTGTCTTCTCCGGTTTTTTCATTTTTAAACCCGGCCTCAACTTAGGTATACTTACCTTATCCTTA
TCCAACTTGAGATACACACT

Downstream 100 bases:

>100_bases
TAAGTTGAGATAGATAAGTAAGCTAATAGCGGTCTTGCATCAAGAGCGATATTTCGTGCCTAGACTCACACCAAGTGCTA
AAATTGTCCTCAGTTAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSHDDDLDLFQEMMGDVKRIDHDTAEHQKVHRVTESHLAKREAAMWLSDDEKDYLSLDYSPMIKPDDVIAYKKDGVQEGV
YKKLRLGKYPIQAKLDLHRKTLKDARNEVLSFLRQCLRMDVRTVIIVHGKGERSNPPAMMKSYVANWLTQINDVQCVHSA
PQFHGGTGAVYVMLRKSNDKKLENRERHQKRSS

Sequences:

>Translated_193_residues
MSHDDDLDLFQEMMGDVKRIDHDTAEHQKVHRVTESHLAKREAAMWLSDDEKDYLSLDYSPMIKPDDVIAYKKDGVQEGV
YKKLRLGKYPIQAKLDLHRKTLKDARNEVLSFLRQCLRMDVRTVIIVHGKGERSNPPAMMKSYVANWLTQINDVQCVHSA
PQFHGGTGAVYVMLRKSNDKKLENRERHQKRSS
>Mature_192_residues
SHDDDLDLFQEMMGDVKRIDHDTAEHQKVHRVTESHLAKREAAMWLSDDEKDYLSLDYSPMIKPDDVIAYKKDGVQEGVY
KKLRLGKYPIQAKLDLHRKTLKDARNEVLSFLRQCLRMDVRTVIIVHGKGERSNPPAMMKSYVANWLTQINDVQCVHSAP
QFHGGTGAVYVMLRKSNDKKLENRERHQKRSS

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=189, Percent_Identity=39.1534391534392, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1788671, Length=175, Percent_Identity=28, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 22403; Mature: 22272

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDDDLDLFQEMMGDVKRIDHDTAEHQKVHRVTESHLAKREAAMWLSDDEKDYLSLDYS
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
PMIKPDDVIAYKKDGVQEGVYKKLRLGKYPIQAKLDLHRKTLKDARNEVLSFLRQCLRMD
CCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VRTVIIVHGKGERSNPPAMMKSYVANWLTQINDVQCVHSAPQFHGGTGAVYVMLRKSNDK
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC
KLENRERHQKRSS
HHHHHHHHHHCCC
>Mature Secondary Structure 
SHDDDLDLFQEMMGDVKRIDHDTAEHQKVHRVTESHLAKREAAMWLSDDEKDYLSLDYS
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
PMIKPDDVIAYKKDGVQEGVYKKLRLGKYPIQAKLDLHRKTLKDARNEVLSFLRQCLRMD
CCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VRTVIIVHGKGERSNPPAMMKSYVANWLTQINDVQCVHSAPQFHGGTGAVYVMLRKSNDK
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC
KLENRERHQKRSS
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]