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The map label for this gene is csiR [H]

Identifier: 218708429

GI number: 218708429

Start: 395580

End: 396251

Strand: Reverse

Name: csiR [H]

Synonym: VS_0391

Alternate gene names: 218708429

Gene position: 396251-395580 (Counterclockwise)

Preceding gene: 218708430

Following gene: 218708428

Centisome position: 12.01

GC content: 42.41

Gene sequence:

>672_bases
GTGAGGTTTGTAATGTCTAGTCCTACGCTTACTGACAAAGTATCCAAGATGATTCGCCAAGATATTCTCAATGGTGAATT
AACCCCAGGTAAAAAACTCGTTGTCGCTGATCTCAAAGCACGCTACAACGTCGGCGCATCTCCAATTCGCGAAGCCTTAG
TGCAGCTATCTTGGAGTAAATACGTAAAGCTAGAGCCACAAAAAGGCTGCTGGGTATCACCGGTATCAAAGAAAGAACTC
AATGACCTATATGAAAGCCTTCGTGTTGTCTCTTCTGTTCTGCTTAAAAAGGCAATTTCAGCAGGCGATGAAAGCTGGGA
ACTGGAAGTATTAACCTCCTACCACAAGCTATCACGCATACAATATGTCTCAGAAGAGTTTGATTGTGTTGAGTGGGAAG
AACGTCACCAGCAGTTCCATGCAGCGTTACTTGAAGGCGCAGACTCAGAGAACATGTTTAAGTTCTTTGATGATCTTATC
AATCAAGTAAAACGCTACCGCTTCCTAGCGATGTCAGCGAAAAGCGCATCTGATGATCTGTTCAATATTGATGAGCATGA
AATGATCATGAAGCTGGTACTTGCTAAAAATGTCGATCAAGCGACAGAACTATTGGATCAACACCTGTTAAGTTCAATGA
AACGAATTGAAGAAGTTATCGAAGCCGCATAA

Upstream 100 bases:

>100_bases
TTCAGTACGCTGTATTATCAATCACATTAGAACTACGTACTGTTAAACTCCAATAAACTCTTCCTAAGAAACGGATTAGC
AGACTAGAAATCAAATATAC

Downstream 100 bases:

>100_bases
TGTCAAGATAGATTCTAACCACATAAAAACGGAGCCTAATGGCTCCGTTTTTTATTTCCAGTATTACGACTGAACTACCA
CCCAAAAAACTCTTTGTGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRFVMSSPTLTDKVSKMIRQDILNGELTPGKKLVVADLKARYNVGASPIREALVQLSWSKYVKLEPQKGCWVSPVSKKEL
NDLYESLRVVSSVLLKKAISAGDESWELEVLTSYHKLSRIQYVSEEFDCVEWEERHQQFHAALLEGADSENMFKFFDDLI
NQVKRYRFLAMSAKSASDDLFNIDEHEMIMKLVLAKNVDQATELLDQHLLSSMKRIEEVIEAA

Sequences:

>Translated_223_residues
MRFVMSSPTLTDKVSKMIRQDILNGELTPGKKLVVADLKARYNVGASPIREALVQLSWSKYVKLEPQKGCWVSPVSKKEL
NDLYESLRVVSSVLLKKAISAGDESWELEVLTSYHKLSRIQYVSEEFDCVEWEERHQQFHAALLEGADSENMFKFFDDLI
NQVKRYRFLAMSAKSASDDLFNIDEHEMIMKLVLAKNVDQATELLDQHLLSSMKRIEEVIEAA
>Mature_223_residues
MRFVMSSPTLTDKVSKMIRQDILNGELTPGKKLVVADLKARYNVGASPIREALVQLSWSKYVKLEPQKGCWVSPVSKKEL
NDLYESLRVVSSVLLKKAISAGDESWELEVLTSYHKLSRIQYVSEEFDCVEWEERHQQFHAALLEGADSENMFKFFDDLI
NQVKRYRFLAMSAKSASDDLFNIDEHEMIMKLVLAKNVDQATELLDQHLLSSMKRIEEVIEAA

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=208, Percent_Identity=32.2115384615385, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=22.9268292682927, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25590; Mature: 25590

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVMSSPTLTDKVSKMIRQDILNGELTPGKKLVVADLKARYNVGASPIREALVQLSWSK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHH
YVKLEPQKGCWVSPVSKKELNDLYESLRVVSSVLLKKAISAGDESWELEVLTSYHKLSRI
HEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QYVSEEFDCVEWEERHQQFHAALLEGADSENMFKFFDDLINQVKRYRFLAMSAKSASDDL
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FNIDEHEMIMKLVLAKNVDQATELLDQHLLSSMKRIEEVIEAA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFVMSSPTLTDKVSKMIRQDILNGELTPGKKLVVADLKARYNVGASPIREALVQLSWSK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHH
YVKLEPQKGCWVSPVSKKELNDLYESLRVVSSVLLKKAISAGDESWELEVLTSYHKLSRI
HEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QYVSEEFDCVEWEERHQQFHAALLEGADSENMFKFFDDLINQVKRYRFLAMSAKSASDDL
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FNIDEHEMIMKLVLAKNVDQATELLDQHLLSSMKRIEEVIEAA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]