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The map label for this gene is 218708359

Identifier: 218708359

GI number: 218708359

Start: 309616

End: 311379

Strand: Reverse

Name: 218708359

Synonym: VS_0319

Alternate gene names: NA

Gene position: 311379-309616 (Counterclockwise)

Preceding gene: 218708360

Following gene: 218708357

Centisome position: 9.44

GC content: 44.1

Gene sequence:

>1764_bases
ATGGCAACAATACACACTAGCGGTACCCAACTAGAAAATCAGGTAACTAAGCTACCACTCAATAAAGCATTTCTTGCCTC
TCTAGCTGTTGTATTCTTATTAGCCATGCATTTTTTCATGCCTAACCCAGGAGGCTCAGGCCTTACTTTATCCTTTAATC
CAACCACTTGGTTAGCCCTTAGCTTTACGCTGGCGATTGGCTTCTACCAACTTGCTACTAACCGAGTACTCAAGTATTCC
AAATTAACGATTGGCTTGTTGATAAGCTGCATCATACTCACAATGCCGATTTTATACAGCAACGCCGCTCCTCAAGGAGC
GTCAGGGCGCTTACTTGGATTGTGGGCGGGCTTTACATTATTCGTCGTGCTGCAACAATTTAAGTTCAGCAATAAGCACA
AGCAGCGCATATTGTGGTTCATTGTGCTTGCTGTTGTCATACAGGCACTATTTGGCTATGTGCAATATTTCCTATTAGAA
CCTGGCAACCTATTTGACTACAACACTGCGGCCAATAGACCTTATGGGATATTCCAACAACCGAATGTTATGGCCAGCTT
TTTAGCTACCGGTTTTGTGCTTTCAGCTTATCTTTTAGCAAGGCAACCAACTAAATATAATCACCAAATTAGCGAGTCGC
TTCTACTTTATTTAACACCAGCCTTAACCGTACCTTTGCTGATCATCATCGCATCACGTACCGGATGGTTGGCTACCGTC
ATTGGATTTGTATGCATTCTGCCTTATCTATACAAGTTCTCGACCAAGAAACGCTTCTACGGGTGGTGTGCATCAGTGCT
CGTCGGTATCGTCGTCGCTTTTTCGGTTATCAGCCTTAGTGCAACTGATAGCCTCGCAAGTAAAAGGACGAACTTAGAAA
GTCCACGAGCTTATACCTTTCCACAAGCGCTCGATATGATGATCGAAAAACCATTTACCGGTTATGGCTACGGAAAGTTC
GAATCCGAATACACGCTATACACAGCACGCCAACATCAACTTAACTCAAATTATCATCCCGGCCTTCCTGCAATGGATCA
CCCACACAATGAGTTCCTGTTTTGGGGGGTTGAAGGCGGAATAGTACCAATCATCGGGATCTTGATTGCTGCAGTGTTGG
TGATGTCACGCATAGCTAACTCAGCAAAAGGAACACGTCTAGCACTACTTGCGCTGTTCATACCGATACTCTTACATTCT
CAGCTTGAGTATCCTTTTTACCACTCGGCGATTCACTGGATAACCTTTATCATTTTGATTTACTGGGTCGACCAACGGAC
TTCTCGCCACTATCAGCAGCCGTTTAGTATCGTCAGTAAAACCCTATTCAGAGTGTCGAGCTTAGTCGTTCCTATCTTGG
TGAGTTTTTACATGCTGAGTGCCTTACACACCAATTACGTACTCACTAAATTTGAAATGTCTAAGCCGAAAAACCCGGAC
ATTCTTAAGCAGGTAACGAACCCCGTAGTATGGAAAGATCGCTATGATTGGGACGTGTACAGTACCTTTCTAAATATCGG
CCTCTACAAAGCCGATCCTAGCCTGATCCAGCCTTATATAGAGTGGTCGTTAGAGATCATAAAGAGTAAGCCAAGGCCAG
CTTTCTACAGCAACCTGATTCTCGCGTATCAAGGCTTGGGCGATCACAGCAAAGCAGAACAAATTCGCAGTGAAGCGAGC
TTCTTGTTCCCAAATCGAGACTTTTCCAAGGTTCAGTACAAGAAGATATCAGAAGCAGAAAACAATATCTCTGCTGCTAA
ATGA

Upstream 100 bases:

>100_bases
GTAGGTGTAAAATAGCGTCCTGCGAGCAGACAGAAAAATGTTAAAGTAACAGAGCTTGTTTCAGAAGGAACAAGCTCTGT
TTTTATAAGGTTAGGGATTT

Downstream 100 bases:

>100_bases
CGCCAAGGAATCTAGAGTCATTTTGCTGTAATGACGTTTAGCCTATAGCCTAGACACAAAAAAGCGCACATTCTCTCGTG
CGCTTTTCTTTTAAACTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Lipid A Core; O-Antigen Polymerase Family; Inner Membrane Protein

Number of amino acids: Translated: 587; Mature: 586

Protein sequence:

>587_residues
MATIHTSGTQLENQVTKLPLNKAFLASLAVVFLLAMHFFMPNPGGSGLTLSFNPTTWLALSFTLAIGFYQLATNRVLKYS
KLTIGLLISCIILTMPILYSNAAPQGASGRLLGLWAGFTLFVVLQQFKFSNKHKQRILWFIVLAVVIQALFGYVQYFLLE
PGNLFDYNTAANRPYGIFQQPNVMASFLATGFVLSAYLLARQPTKYNHQISESLLLYLTPALTVPLLIIIASRTGWLATV
IGFVCILPYLYKFSTKKRFYGWCASVLVGIVVAFSVISLSATDSLASKRTNLESPRAYTFPQALDMMIEKPFTGYGYGKF
ESEYTLYTARQHQLNSNYHPGLPAMDHPHNEFLFWGVEGGIVPIIGILIAAVLVMSRIANSAKGTRLALLALFIPILLHS
QLEYPFYHSAIHWITFIILIYWVDQRTSRHYQQPFSIVSKTLFRVSSLVVPILVSFYMLSALHTNYVLTKFEMSKPKNPD
ILKQVTNPVVWKDRYDWDVYSTFLNIGLYKADPSLIQPYIEWSLEIIKSKPRPAFYSNLILAYQGLGDHSKAEQIRSEAS
FLFPNRDFSKVQYKKISEAENNISAAK

Sequences:

>Translated_587_residues
MATIHTSGTQLENQVTKLPLNKAFLASLAVVFLLAMHFFMPNPGGSGLTLSFNPTTWLALSFTLAIGFYQLATNRVLKYS
KLTIGLLISCIILTMPILYSNAAPQGASGRLLGLWAGFTLFVVLQQFKFSNKHKQRILWFIVLAVVIQALFGYVQYFLLE
PGNLFDYNTAANRPYGIFQQPNVMASFLATGFVLSAYLLARQPTKYNHQISESLLLYLTPALTVPLLIIIASRTGWLATV
IGFVCILPYLYKFSTKKRFYGWCASVLVGIVVAFSVISLSATDSLASKRTNLESPRAYTFPQALDMMIEKPFTGYGYGKF
ESEYTLYTARQHQLNSNYHPGLPAMDHPHNEFLFWGVEGGIVPIIGILIAAVLVMSRIANSAKGTRLALLALFIPILLHS
QLEYPFYHSAIHWITFIILIYWVDQRTSRHYQQPFSIVSKTLFRVSSLVVPILVSFYMLSALHTNYVLTKFEMSKPKNPD
ILKQVTNPVVWKDRYDWDVYSTFLNIGLYKADPSLIQPYIEWSLEIIKSKPRPAFYSNLILAYQGLGDHSKAEQIRSEAS
FLFPNRDFSKVQYKKISEAENNISAAK
>Mature_586_residues
ATIHTSGTQLENQVTKLPLNKAFLASLAVVFLLAMHFFMPNPGGSGLTLSFNPTTWLALSFTLAIGFYQLATNRVLKYSK
LTIGLLISCIILTMPILYSNAAPQGASGRLLGLWAGFTLFVVLQQFKFSNKHKQRILWFIVLAVVIQALFGYVQYFLLEP
GNLFDYNTAANRPYGIFQQPNVMASFLATGFVLSAYLLARQPTKYNHQISESLLLYLTPALTVPLLIIIASRTGWLATVI
GFVCILPYLYKFSTKKRFYGWCASVLVGIVVAFSVISLSATDSLASKRTNLESPRAYTFPQALDMMIEKPFTGYGYGKFE
SEYTLYTARQHQLNSNYHPGLPAMDHPHNEFLFWGVEGGIVPIIGILIAAVLVMSRIANSAKGTRLALLALFIPILLHSQ
LEYPFYHSAIHWITFIILIYWVDQRTSRHYQQPFSIVSKTLFRVSSLVVPILVSFYMLSALHTNYVLTKFEMSKPKNPDI
LKQVTNPVVWKDRYDWDVYSTFLNIGLYKADPSLIQPYIEWSLEIIKSKPRPAFYSNLILAYQGLGDHSKAEQIRSEASF
LFPNRDFSKVQYKKISEAENNISAAK

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66282; Mature: 66151

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIHTSGTQLENQVTKLPLNKAFLASLAVVFLLAMHFFMPNPGGSGLTLSFNPTTWLAL
CCEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHH
SFTLAIGFYQLATNRVLKYSKLTIGLLISCIILTMPILYSNAAPQGASGRLLGLWAGFTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHH
FVVLQQFKFSNKHKQRILWFIVLAVVIQALFGYVQYFLLEPGNLFDYNTAANRPYGIFQQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PNVMASFLATGFVLSAYLLARQPTKYNHQISESLLLYLTPALTVPLLIIIASRTGWLATV
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IGFVCILPYLYKFSTKKRFYGWCASVLVGIVVAFSVISLSATDSLASKRTNLESPRAYTF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PQALDMMIEKPFTGYGYGKFESEYTLYTARQHQLNSNYHPGLPAMDHPHNEFLFWGVEGG
HHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
IVPIIGILIAAVLVMSRIANSAKGTRLALLALFIPILLHSQLEYPFYHSAIHWITFIILI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
YWVDQRTSRHYQQPFSIVSKTLFRVSSLVVPILVSFYMLSALHTNYVLTKFEMSKPKNPD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCH
ILKQVTNPVVWKDRYDWDVYSTFLNIGLYKADPSLIQPYIEWSLEIIKSKPRPAFYSNLI
HHHHHCCCCEECCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LAYQGLGDHSKAEQIRSEASFLFPNRDFSKVQYKKISEAENNISAAK
HHCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATIHTSGTQLENQVTKLPLNKAFLASLAVVFLLAMHFFMPNPGGSGLTLSFNPTTWLAL
CEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHH
SFTLAIGFYQLATNRVLKYSKLTIGLLISCIILTMPILYSNAAPQGASGRLLGLWAGFTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHH
FVVLQQFKFSNKHKQRILWFIVLAVVIQALFGYVQYFLLEPGNLFDYNTAANRPYGIFQQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PNVMASFLATGFVLSAYLLARQPTKYNHQISESLLLYLTPALTVPLLIIIASRTGWLATV
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IGFVCILPYLYKFSTKKRFYGWCASVLVGIVVAFSVISLSATDSLASKRTNLESPRAYTF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PQALDMMIEKPFTGYGYGKFESEYTLYTARQHQLNSNYHPGLPAMDHPHNEFLFWGVEGG
HHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCC
IVPIIGILIAAVLVMSRIANSAKGTRLALLALFIPILLHSQLEYPFYHSAIHWITFIILI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
YWVDQRTSRHYQQPFSIVSKTLFRVSSLVVPILVSFYMLSALHTNYVLTKFEMSKPKNPD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCH
ILKQVTNPVVWKDRYDWDVYSTFLNIGLYKADPSLIQPYIEWSLEIIKSKPRPAFYSNLI
HHHHHCCCCEECCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LAYQGLGDHSKAEQIRSEASFLFPNRDFSKVQYKKISEAENNISAAK
HHCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA