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The map label for this gene is yvbU [H]

Identifier: 218700710

GI number: 218700710

Start: 2466682

End: 2467581

Strand: Direct

Name: yvbU [H]

Synonym: ECIAI39_2381

Alternate gene names: 218700710

Gene position: 2466682-2467581 (Clockwise)

Preceding gene: 218700707

Following gene: 218700713

Centisome position: 48.06

GC content: 43.22

Gene sequence:

>900_bases
ATGACTCTTACCCAAATAAATTCTTTACTCGCCGTGCTGGATTACGGTGGCTTTACTGAAGCCAGCAAGCGATTGTTCAT
GACGCAGTCGGCGGTAAGTCAGGCAATTGCTGCCCTCGAACAAGAACTTGGCGTGAATATACTGTTACGCGATCGCCGTA
AAGCTATACAACTGACCTCTGCAGGTCACCGCATTATGCATCATCTGCGCGCCATTAATCGGGAAGTGAACGCAGTAAAA
GAGATAGCCGAGCAGGAAAAGCAGAACCCTCAAAGAACGCTGAGACTTGGTTGTTTCCCCAGCGTCTGCGCCTGTATCTT
ACCGGCTGTGATTCGCTACTTTGAAATTCATCATCCGAATATAAAAATTATTCCTTTTGAGGAAAATAGCACAGCGATTA
TTGATTCCCTTCAGAATGAATCCATTGATGCCGGTTTTGTTCATTTTCCGGTGAGCGGAATGTACTCCGTGCCCATTTAT
CAGGATAAATTCACCGTAGTGTTACCGCCCTACCATGCTCTGGCAAAAAACAGCACTATTACAGTGGAAGAGTTAATGGG
TGAACCATTAATTATTAGTAAAGGACGCTATGAATTAAGCATTATGGCACTATTTAAAGAAAAGAATATTACCCCACAGA
TAAAATATGAATTTAATCACCCGGATACAGCGATCAGTTTTATTCGACAGGGATTAGGCATCGCCTTATTACCAGAGTTA
ACGCTGAAAACCATTGCAGATGAATTGTGTTCCGTTCCTCTCGAACCAACCTTCTATCGACAGATTTCGTTGCTGGCTAA
AGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCACAGAACAATTAGTGGAGAGTGGAAAATTTGATA
TGAGACAGGATGGCGCATGA

Upstream 100 bases:

>100_bases
GTTGCGTCAAATTGTGATGTACTTTGCAGAACAGAAGTATAAATGGCGGCATGCTATTAGAGAAATTAATCGTTTTAATA
TTATTGATTAGCAAACTCTA

Downstream 100 bases:

>100_bases
ACGCCATCCTGCAGTAGCATTACTCTTTATTAAGGAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACA
CCCGCTTTGTTATACAGAGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTSAGHRIMHHLRAINREVNAVK
EIAEQEKQNPQRTLRLGCFPSVCACILPAVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIY
QDKFTVVLPPYHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVESGKFDMRQDGA

Sequences:

>Translated_299_residues
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTSAGHRIMHHLRAINREVNAVK
EIAEQEKQNPQRTLRLGCFPSVCACILPAVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIY
QDKFTVVLPPYHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVESGKFDMRQDGA
>Mature_298_residues
TLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTSAGHRIMHHLRAINREVNAVKE
IAEQEKQNPQRTLRLGCFPSVCACILPAVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQ
DKFTVVLPPYHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELT
LKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVESGKFDMRQDGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=25.390625, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=28.6259541984733, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=25.6410256410256, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.8688524590164, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693105, Length=276, Percent_Identity=26.4492753623188, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787806, Length=281, Percent_Identity=21.7081850533808, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=26.0330578512397, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=306, Percent_Identity=24.8366013071895, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=25.609756097561, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787601, Length=244, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788296, Length=231, Percent_Identity=25.5411255411255, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788481, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=257, Percent_Identity=26.0700389105058, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082132, Length=148, Percent_Identity=28.3783783783784, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33554; Mature: 33423

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTS
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
AGHRIMHHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPAVIRYFEIHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCC
IKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPYHALAKNSTI
EEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCEEECCEECCCEEEEECCHHHHHCCCCE
TVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
EHHHHCCCCEEEECCCEEEEEEEEEHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEHHHH
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVESGKFDMRQDGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTS
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
AGHRIMHHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPAVIRYFEIHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHCCCCC
IKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPYHALAKNSTI
EEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCEEECCEECCCEEEEECCHHHHHCCCCE
TVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPEL
EHHHHCCCCEEEECCCEEEEEEEEEHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEHHHH
TLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVESGKFDMRQDGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]