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The map label for this gene is ydgT

Identifier: 218699807

GI number: 218699807

Start: 1502080

End: 1502295

Strand: Reverse

Name: ydgT

Synonym: ECIAI39_1431

Alternate gene names: 218699807

Gene position: 1502295-1502080 (Counterclockwise)

Preceding gene: 218699808

Following gene: 218699806

Centisome position: 29.27

GC content: 47.22

Gene sequence:

>216_bases
ATGACTGTTCAGGACTACTTATTAAAATTTCGCAAAATCAGTTCACTCGAAAGTCTGGAAAAACTCTACGACCATCTTAA
TTACACTCTGACGGATGATCAGGAACTGATCAATATGTATCGTGCTGCCGATCACCGCCGCGCAGAGCTGGTTTCTGGCG
GGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAGTAA

Upstream 100 bases:

>100_bases
ATTCTTATTATTGTAATAACACACGCGTTCACTTTTGGTGAAATTTTATCATCACTAATAATACCTACTCCTTTGGTATT
AATTATTTTATGGACCTTTT

Downstream 100 bases:

>100_bases
AGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAG
AACCTATGACCACCACAACG

Product: oriC-binding nucleoid-associated protein

Products: NA

Alternate protein names: H-NS/stpA-binding protein 2

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ

Sequences:

>Translated_71_residues
MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ
>Mature_70_residues
TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ

Specific function: The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hha/ymoA/cnu family

Homologues:

Organism=Escherichia coli, GI1787912, Length=71, Percent_Identity=100, Blast_Score=148, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CNU_ECO57 (P64469)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B85769
- PIR:   F90920
- RefSeq:   NP_288061.1
- RefSeq:   NP_310361.1
- ProteinModelPortal:   P64469
- SMR:   P64469
- EnsemblBacteria:   EBESCT00000025426
- EnsemblBacteria:   EBESCT00000060304
- GeneID:   912671
- GeneID:   961575
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2631
- KEGG:   ecs:ECs2334
- GeneTree:   EBGT00050000009907
- HOGENOM:   HBG472615
- OMA:   IINMYRA
- ProtClustDB:   PRK10391
- BioCyc:   ECOL83334:ECS2334-MONOMER
- InterPro:   IPR007985
- Gene3D:   G3DSA:1.20.1280.40

Pfam domain/function: PF05321 HHA; SSF68989 Haemolysin_expr_modulating

EC number: NA

Molecular weight: Translated: 8417; Mature: 8285

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHH
QVPKSVWHYVQ
HHHHHHHHCCC
>Mature Secondary Structure 
TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHH
QVPKSVWHYVQ
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796