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The map label for this gene is lfpB

Identifier: 218697453

GI number: 218697453

Start: 4290481

End: 4291212

Strand: Reverse

Name: lfpB

Synonym: EC55989_4202

Alternate gene names: 218697453

Gene position: 4291212-4290481 (Counterclockwise)

Preceding gene: 218697454

Following gene: 218697452

Centisome position: 83.25

GC content: 42.62

Gene sequence:

>732_bases
ATGTCCAGAAAAAGTTGTTTAATCAGGCTCTTTAAAACAACAGTTTCATGTAAGTTATTTACCGCGATTATACTCAGCGT
TTTTTTAGGCCAACCAGCATTAACTTATGCAGGCGTTGTCATTGGTGGTACGCGGGTGGTTTACTTAAGTAATAATGCTG
ATAAATCTATTTCTGTATTTAGCAAAGAAGAAAAAATACCTTATCTCATCCAGGCTTGGGTAGATCCATTTAATAAAGAG
GATAAAAGCAAAGCGCCGTTTACCGTTATTCCGCCAGTATCACGATTAGAACCTTCGCAAGAAAAAATATTACGCATTAT
TCACACCAAAGGTGTGTCATTGCCTGATGATCGCGAGTCAGTCTTCTGGCTGAATATTAAAAATATTCCGCCATCAGCGA
GCAACAAAGCGACGAACTCGCTGGAAATAGCAGTAAAAACGCGTATCAAGCTGTTCTGGCGACCAGCAAATATCCGCCTT
ATTCCCGAAGATGCTGCGCCGAAAGTGAAATGGCGCCGGGAAGGGCGAAATCTGATAGCAGAGAATCCCAACCCAATTCA
TATCAGTGTGATGGATGTCATCGTTGATGGCCATGATGTGCCCCTCAATATGATCCGTCCTTTTGAAACGCTCACGTTAC
CTTTACCTGCTAATTCTGCGGGAGGCCAAATGACCTGGCGATTTATTAATGATTACGGCGCAGTCAGTGACCCGATAAAA
ATGACGCTGTAA

Upstream 100 bases:

>100_bases
CGGCTGGTACGGCGAACGCGGATTCACAATTTACTGTCGAATATAAGAAATAATTTATCAAGGGCCTTTTTATTCAGTTG
GCTTTGGCCAGGGAGTCGTT

Downstream 100 bases:

>100_bases
GCAAGGGATAAGGATAGGCGTATTATGATGACGACCAGAATAGTGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTC
GCAAAACCTGATGGCCGAGG

Product: putative fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKE
DKSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDDRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL
IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIK
MTL

Sequences:

>Translated_243_residues
MSRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKE
DKSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDDRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL
IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIK
MTL
>Mature_242_residues
SRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKED
KSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDDRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRLI
PEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIKM
TL

Specific function: Involved in the biogenesis of the F1C fimbriae [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1790771, Length=237, Percent_Identity=34.5991561181435, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1789532, Length=218, Percent_Identity=37.1559633027523, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787171, Length=231, Percent_Identity=33.7662337662338, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786743, Length=222, Percent_Identity=29.7297297297297, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=34.3096234309623, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786936, Length=223, Percent_Identity=30.0448430493274, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788428, Length=234, Percent_Identity=31.6239316239316, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788677, Length=201, Percent_Identity=33.8308457711443, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082203, Length=212, Percent_Identity=25.9433962264151, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081806, Length=207, Percent_Identity=29.4685990338164, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27232; Mature: 27101

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNADKSISVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCEEEEEEECCCCCEEEEE
SKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDDRES
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCC
VFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRLIPEDAAPKVKWRREGRNLIA
EEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCCEECCCCCEEC
ENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIK
CCCCEEEEEEEEEEECCCCCCHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEE
MTL
ECC
>Mature Secondary Structure 
SRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGTRVVYLSNNADKSISVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCEEEEEEECCCCCEEEEE
SKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDDRES
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCC
VFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRLIPEDAAPKVKWRREGRNLIA
EEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCCEECCCCCEEC
ENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIK
CCCCEEEEEEEEEEECCCCCCHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEE
MTL
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]